Information for 8-AAGCTAATCMYYH (Motif 6)

G T C A C T G A T A C G A T G C C G A T C G T A G T C A A C G T A G T C G T C A G A C T G A T C G T A C
Reverse Opposite:
C A T G C T A G C T G A C A G T T C A G G T C A A C G T A C G T G C T A T A C G A T G C G A C T A C G T
p-value:1e-18
log p-value:-4.328e+01
Information Content per bp:1.617
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.12%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets54.1 +/- 26.5bp
Average Position of motif in Background55.7 +/- 23.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.79
Offset:2
Orientation:forward strand
Alignment:AAGCTAATCMYYH
--GCTAATCC---
 G T C A C T G A T A C G A T G C C G A T C G T A G T C A A C G T A G T C G T C A G A C T G A T C G T A C
A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:2
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--AAGCTAATCMYYH-
GNNAGCTAATCCCCCN
 A C G T A C G T G T C A C T G A T A C G A T G C C G A T C G T A G T C A A C G T A G T C G T C A G A C T G A T C G T A C A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

Crx/MA0467.1/Jaspar

Match Rank:3
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:AAGCTAATCMYYH-
---CTAATCCTCTT
 G T C A C T G A T A C G A T G C C G A T C G T A G T C A A C G T A G T C G T C A G A C T G A T C G T A C A C G T
A C G T A C G T A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

GSC/MA0648.1/Jaspar

Match Rank:4
Score:0.77
Offset:2
Orientation:forward strand
Alignment:AAGCTAATCMYYH
--GCTAATCCCC-
 G T C A C T G A T A C G A T G C C G A T C G T A G T C A A C G T A G T C G T C A G A C T G A T C G T A C
A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.77
Offset:2
Orientation:forward strand
Alignment:AAGCTAATCMYYH
--NYTAATCCYB-
 G T C A C T G A T A C G A T G C C G A T C G T A G T C A A C G T A G T C G T C A G A C T G A T C G T A C
A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.75
Offset:2
Orientation:forward strand
Alignment:AAGCTAATCMYYH
--CTTAATCCC--
 G T C A C T G A T A C G A T G C C G A T C G T A G T C A A C G T A G T C G T C A G A C T G A T C G T A C
A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:AAGCTAATCMYYH
---YTAATCCY--
 G T C A C T G A T A C G A T G C C G A T C G T A G T C A A C G T A G T C G T C A G A C T G A T C G T A C
A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.75
Offset:2
Orientation:forward strand
Alignment:AAGCTAATCMYYH
--CCTAATCCGC-
 G T C A C T G A T A C G A T G C C G A T C G T A G T C A A C G T A G T C G T C A G A C T G A T C G T A C
A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T

DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer

Match Rank:9
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---AAGCTAATCMYYH
NWTAAYCYAATCAWN-
 A C G T A C G T A C G T G T C A C T G A T A C G A T G C C G A T C G T A G T C A A C G T A G T C G T C A G A C T G A T C G T A C
C A T G G C A T C G A T C G T A C G T A G A T C A G T C A G C T C G T A C G T A A C G T A G T C C G T A C G T A G C A T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.74
Offset:3
Orientation:forward strand
Alignment:AAGCTAATCMYYH
---TTAATCCC--
 G T C A C T G A T A C G A T G C C G A T C G T A G T C A A C G T A G T C G T C A G A C T G A T C G T A C
A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T