Information for 24-CDCAGCCGGCHGA (Motif 33)

A G T C C T A G A G T C C G T A A C T G A G T C A G T C C T A G C T A G A T G C G A C T C T A G C G T A
Reverse Opposite:
C G A T A G T C C G T A A T C G A G T C A G T C C T A G C T A G A G T C A C G T A C T G G A C T C T A G
p-value:1e-5
log p-value:-1.271e+01
Information Content per bp:1.765
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.4 +/- 29.9bp
Average Position of motif in Background52.6 +/- 0.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CDCAGCCGGCHGA
CACAGCAGGGGG-
 A G T C C T A G A G T C C G T A A C T G A G T C A G T C C T A G C T A G A T G C G A C T C T A G C G T A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CDCAGCCGGCHGA
DCTCAGCAGG----
 A C G T A G T C C T A G A G T C C G T A A C T G A G T C A G T C C T A G C T A G A T G C G A C T C T A G C G T A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CDCAGCCGGCHGA-
DCHCAGCAGGRGGCC
 A C G T A G T C C T A G A G T C C G T A A C T G A G T C A G T C C T A G C T A G A T G C G A C T C T A G C G T A A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CDCAGCCGGCHGA
CACAGN-------
 A G T C C T A G A G T C C G T A A C T G A G T C A G T C C T A G C T A G A T G C G A C T C T A G C G T A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CDCAGCCGGCHGA
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C C T A G A G T C C G T A A C T G A G T C A G T C C T A G C T A G A T G C G A C T C T A G C G T A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CDCAGCCGGCHGA
GAGCACAGCAGGACA-
 A C G T A C G T A C G T A G T C C T A G A G T C C G T A A C T G A G T C A G T C C T A G C T A G A T G C G A C T C T A G C G T A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CDCAGCCGGCHGA-
CACAGCGGGGGGTC
 A G T C C T A G A G T C C G T A A C T G A G T C A G T C C T A G C T A G A T G C G A C T C T A G C G T A A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CDCAGCCGGCHGA-
NCGCAGCGGGGGGTC
 A C G T A G T C C T A G A G T C C G T A A C T G A G T C A G T C C T A G C T A G A T G C G A C T C T A G C G T A A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CDCAGCCGGCHGA
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C C T A G A G T C C G T A A C T G A G T C A G T C C T A G C T A G A T G C G A C T C T A G C G T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CDCAGCCGGCHGA
-HCAGCTGDTN--
 A G T C C T A G A G T C C G T A A C T G A G T C A G T C C T A G C T A G A T G C G A C T C T A G C G T A
A C G T G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T A C G T A C G T