Information for 18-ACTAATTGGATTA (Motif 22)

G C T A A G T C G C A T T C G A G C T A G A C T A G C T C T A G T C A G G C T A C A G T G C A T T C G A
Reverse Opposite:
A C G T C G T A G T C A C G A T A G T C G A T C T C G A C G T A C G A T A G C T C G T A T A C G C A G T
p-value:1e-10
log p-value:-2.417e+01
Information Content per bp:1.537
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets40.5 +/- 19.0bp
Average Position of motif in Background47.8 +/- 8.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Phox2b/MA0681.1/Jaspar

Match Rank:1
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:ACTAATTGGATTA
--TAATTAAATTA
 G C T A A G T C G C A T T C G A G C T A G A C T A G C T C T A G T C A G G C T A C A G T G C A T T C G A
A C G T A C G T G C A T C G T A C T G A A G C T A G C T C T G A T C G A C T G A A G C T G A C T C G T A

PHOX2A/MA0713.1/Jaspar

Match Rank:2
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:ACTAATTGGATTA
--TAATTAAATTA
 G C T A A G T C G C A T T C G A G C T A G A C T A G C T C T A G T C A G G C T A C A G T G C A T T C G A
A C G T A C G T G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.86
Offset:1
Orientation:forward strand
Alignment:ACTAATTGGATTA
-YTAATYNRATTA
 G C T A A G T C G C A T T C G A G C T A G A C T A G C T C T A G T C A G G C T A C A G T G C A T T C G A
A C G T G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A

PROP1/MA0715.1/Jaspar

Match Rank:4
Score:0.85
Offset:2
Orientation:reverse strand
Alignment:ACTAATTGGATTA
--TAATTAAATTA
 G C T A A G T C G C A T T C G A G C T A G A C T A G C T C T A G T C A G G C T A C A G T G C A T T C G A
A C G T A C G T G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:5
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:ACTAATTGGATTA
-GTAATCDGATTA
 G C T A A G T C G C A T T C G A G C T A G A C T A G C T C T A G T C A G G C T A C A G T G C A T T C G A
A C G T C A T G C G A T T C G A C T G A G C A T A G T C C A T G T C A G C T G A A C G T G A C T C G T A

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:6
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:ACTAATTGGATTA-
--TAATTNVATTAN
 G C T A A G T C G C A T T C G A G C T A G A C T A G C T C T A G T C A G G C T A C A G T G C A T T C G A A C G T
A C G T A C G T G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G

DUX4/MA0468.1/Jaspar

Match Rank:7
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:ACTAATTGGATTA
--TGATTAAATTA
 G C T A A G T C G C A T T C G A G C T A G A C T A G C T C T A G T C A G G C T A C A G T G C A T T C G A
A C G T A C G T C G A T C T A G C G T A A C G T C A G T T C G A T C G A C T G A A C G T A G C T C G T A

DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer

Match Rank:8
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:ACTAATTGGATTA--
NWTGATTRGRTTAWN
 G C T A A G T C G C A T T C G A G C T A G A C T A G C T C T A G T C A G G C T A C A G T G C A T T C G A A C G T A C G T
C G T A G C A T C G A T C T A G C G T A A C G T A C G T C T G A T C A G C T A G A C G T A C G T G C T A C G T A G T A C

PH0092.1_Lhx2/Jaspar

Match Rank:9
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----ACTAATTGGATTA
NNNNNCTAATTAGTTTA
 A C G T A C G T A C G T A C G T G C T A A G T C G C A T T C G A G C T A G A C T A G C T C T A G T C A G G C T A C A G T G C A T T C G A
A T C G C A G T A C G T G T A C T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A G T A C G T G C T A

MSX2/MA0708.1/Jaspar

Match Rank:10
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:ACTAATTGGATTA
-NTAATTGG----
 G C T A A G T C G C A T T C G A G C T A G A C T A G C T C T A G T C A G G C T A C A G T G C A T T C G A
A C G T A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G A C G T A C G T A C G T A C G T