Information for 3-CCATTGTCTT (Motif 2)

T A G C A G T C G C T A A C G T A C G T T C A G G A C T G A T C A G C T A C G T
Reverse Opposite:
C G T A C T G A C T A G C T G A A G T C C G T A G T C A C G A T C T A G A T C G
p-value:1e-26
log p-value:-6.146e+01
Information Content per bp:1.759
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif8.17%
Number of Background Sequences with motif85.8
Percentage of Background Sequences with motif1.22%
Average Position of motif in Targets60.3 +/- 24.9bp
Average Position of motif in Background52.6 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6/MA0515.1/Jaspar

Match Rank:1
Score:0.92
Offset:0
Orientation:forward strand
Alignment:CCATTGTCTT
CCATTGTTTT
 T A G C A G T C G C T A A C G T A C G T T C A G G A C T G A T C A G C T A C G T
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:2
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-CCATTGTCTT
NCCATTGTTY-
 A C G T T A G C A G T C G C T A A C G T A C G T T C A G G A C T G A T C A G C T A C G T
C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.85
Offset:0
Orientation:forward strand
Alignment:CCATTGTCTT
CCATTGTTYB
 T A G C A G T C G C T A A C G T A C G T T C A G G A C T G A T C A G C T A C G T
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CCATTGTCTT
CCTTTGTTTT
 T A G C A G T C G C T A A C G T A C G T T C A G G A C T G A T C A G C T A C G T
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CCATTGTCTT
CCWTTGTY--
 T A G C A G T C G C T A A C G T A C G T T C A G G A C T G A T C A G C T A C G T
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CCATTGTCTT
CCWTTGTYYB
 T A G C A G T C G C T A A C G T A C G T T C A G G A C T G A T C A G C T A C G T
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CCATTGTCTT
CCATTGTTNY
 T A G C A G T C G C T A A C G T A C G T T C A G G A C T G A T C A G C T A C G T
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-CCATTGTCTT
NCCATTGTTC-
 A C G T T A G C A G T C G C T A A C G T A C G T T C A G G A C T G A T C A G C T A C G T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

Sox17/MA0078.1/Jaspar

Match Rank:9
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-CCATTGTCTT
CTCATTGTC--
 A C G T T A G C A G T C G C T A A C G T A C G T T C A G G A C T G A T C A G C T A C G T
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:10
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CCATTGTCTT
CCTTTGTT--
 T A G C A G T C G C T A A C G T A C G T T C A G G A C T G A T C A G C T A C G T
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T