Information for 15-YCWCASCTWTTGT (Motif 17)

A G T C G T A C G C A T A G T C C G T A A T C G A G T C G A C T G C T A A C G T A C G T A C T G A G C T
Reverse Opposite:
C T G A A G T C G T C A C G T A C G A T C G T A A C T G A T G C A C G T C T A G C G T A A C T G C T A G
p-value:1e-12
log p-value:-2.963e+01
Information Content per bp:1.727
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets61.1 +/- 19.1bp
Average Position of motif in Background55.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf21/MA0832.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-YCWCASCTWTTGT
NCAACAGCTGTTGC
 A C G T A G T C G T A C G C A T A G T C C G T A A T C G A G T C G A C T G C T A A C G T A C G T A C T G A G C T
T C G A A G T C C T G A T G C A A G T C C G T A T A C G G T A C A C G T A C T G A C G T G A C T C T A G A G T C

SCRT2/MA0744.1/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:YCWCASCTWTTGT--
--CCACCTGTTGCAT
 A G T C G T A C G C A T A G T C C G T A A T C G A G T C G A C T G C T A A C G T A C G T A C T G A G C T A C G T A C G T
A C G T A C G T T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T

SCRT1/MA0743.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:YCWCASCTWTTGT--
ANCCACCTGTTGCNC
 A G T C G T A C G C A T A G T C C G T A A T C G A G T C G A C T G C T A A C G T A C G T A C T G A G C T A C G T A C G T
C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C

PB0183.1_Sry_2/Jaspar

Match Rank:4
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:YCWCASCTWTTGT-------
---CNNNTATTGTTCNNNNN
 A G T C G T A C G C A T A G T C C G T A A T C G A G T C G A C T G C T A A C G T A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.64
Offset:6
Orientation:forward strand
Alignment:YCWCASCTWTTGT-
------CCWTTGTY
 A G T C G T A C G C A T A G T C C G T A A T C G A G T C G A C T G C T A A C G T A C G T A C T G A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.63
Offset:5
Orientation:forward strand
Alignment:YCWCASCTWTTGT--
-----NCCATTGTTC
 A G T C G T A C G C A T A G T C C G T A A T C G A G T C G A C T G C T A A C G T A C G T A C T G A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

MSC/MA0665.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:YCWCASCTWTTGT
-AACAGCTGTT--
 A G T C G T A C G C A T A G T C C G T A A T C G A G T C G A C T G C T A A C G T A C G T A C T G A G C T
A C G T C T G A T G C A A T G C C G T A A T C G A T G C A C G T A C T G A G C T A G C T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.62
Offset:6
Orientation:forward strand
Alignment:YCWCASCTWTTGT-
------CCTTTGTT
 A G T C G T A C G C A T A G T C C G T A A T C G A G T C G A C T G C T A A C G T A C G T A C T G A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.61
Offset:6
Orientation:forward strand
Alignment:YCWCASCTWTTGT--
------CCATTGTTC
 A G T C G T A C G C A T A G T C C G T A A T C G A G T C G A C T G C T A A C G T A C G T A C T G A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.61
Offset:6
Orientation:forward strand
Alignment:YCWCASCTWTTGT---
------CCATTGTTNY
 A G T C G T A C G C A T A G T C C G T A A T C G A G T C G A C T G C T A A C G T A C G T A C T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T