Information for 20-AAGACRAAGG (Motif 36)

C G T A G C T A T A C G C G T A T G A C T C A G G T C A C G T A C A T G A T C G
Reverse Opposite:
T A G C G T A C G C A T A C G T A G T C A C T G A C G T A T G C C G A T A C G T
p-value:1e-5
log p-value:-1.355e+01
Information Content per bp:1.679
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.24%
Number of Background Sequences with motif219.3
Percentage of Background Sequences with motif0.48%
Average Position of motif in Targets54.5 +/- 26.9bp
Average Position of motif in Background49.0 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:AAGACRAAGG
AAAACAAAGG
 C G T A G C T A T A C G C G T A T G A C T C A G G T C A C G T A C A T G A T C G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

PB0032.1_IRC900814_1/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AAGACRAAGG--
ATTTACGACAAATAGC
 A C G T A C G T A C G T A C G T C G T A G C T A T A C G C G T A T G A C T C A G G T C A C G T A C A T G A T C G A C G T A C G T
C G T A C G A T G A C T A G C T G C T A A G T C A C T G C T G A T G A C C T G A C G T A G C T A G C A T C G T A C T A G A G T C

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AAGACRAAGG
--AACAAAGG
 C G T A G C T A T A C G C G T A T G A C T C A G G T C A C G T A C A T G A T C G
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AAGACRAAGG---
AAACAGACAAAGGAAT
 A C G T A C G T A C G T C G T A G C T A T A C G C G T A T G A C T C A G G T C A C G T A C A T G A T C G A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox6/MA0515.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AAGACRAAGG
AAAACAATGG
 C G T A G C T A T A C G C G T A T G A C T C A G G T C A C G T A C A T G A T C G
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AAGACRAAGG
--RACAAWGG
 C G T A G C T A T A C G C G T A T G A C T C A G G T C A C G T A C A T G A T C G
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AAGACRAAGG----
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T C G T A G C T A T A C G C G T A T G A C T C A G G T C A C G T A C A T G A T C G A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0061.1_Sox11_1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AAGACRAAGG----
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T C G T A G C T A T A C G C G T A T G A C T C A G G T C A C G T A C A T G A T C G A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AAGACRAAGG
ANCAGGAAGT
 C G T A G C T A T A C G C G T A T G A C T C A G G T C A C G T A C A T G A T C G
C G T A T G A C T A G C T G C A A C T G A C T G C G T A C G T A T C A G G A C T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AAGACRAAGG
VRRACAAWGG
 C G T A G C T A T A C G C G T A T G A C T C A G G T C A C G T A C A T G A T C G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G