Information for 5-TAAKTAGAAGCTGCTG (Motif 15)

C A G T C T G A C G T A C A T G A G C T C G T A C T A G T C G A C T G A A C T G A G T C A G C T A C T G A G T C A C G T C T A G
Reverse Opposite:
A G T C C G T A A C T G T G A C C T G A A C T G A G T C G A C T A G C T A G T C A C G T C T G A G T A C A C G T A G C T G C T A
p-value:1e-11
log p-value:-2.595e+01
Information Content per bp:1.765
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.0 +/- 28.7bp
Average Position of motif in Background75.7 +/- 6.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:TAAKTAGAAGCTGCTG----
-----AGATGCTRCTRCCHT
 C A G T C T G A C G T A C A T G A G C T C G T A C T A G T C G A C T G A A C T G A G T C A G C T A C T G A G T C A C G T C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

PB0003.1_Ascl2_1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TAAKTAGAAGCTGCTG--
-NNNNAGCAGCTGCTGAN
 C A G T C T G A C G T A C A T G A G C T C G T A C T A G T C G A C T G A A C T G A G T C A G C T A C T G A G T C A C G T C T A G A C G T A C G T
A C G T G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

Ascl2/MA0816.1/Jaspar

Match Rank:3
Score:0.60
Offset:5
Orientation:forward strand
Alignment:TAAKTAGAAGCTGCTG
-----AGCAGCTGCT-
 C A G T C T G A C G T A C A T G A G C T C G T A C T A G T C G A C T G A A C T G A G T C A G C T A C T G A G T C A C G T C T A G
A C G T A C G T A C G T A C G T A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T

VSX2/MA0726.1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TAAKTAGAAGCTGCTG
NTAATTAG---------
 A C G T C A G T C T G A C G T A C A T G A G C T C G T A C T A G T C G A C T G A A C T G A G T C A G C T A C T G A G T C A C G T C T A G
T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TAAKTAGAAGCTGCTG
TAATTAGN--------
 C A G T C T G A C G T A C A T G A G C T C G T A C T A G T C G A C T G A A C T G A G T C A G C T A C T G A G T C A C G T C T A G
A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

VSX1/MA0725.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TAAKTAGAAGCTGCTG
NTAATTAG---------
 A C G T C A G T C T G A C G T A C A T G A G C T C G T A C T A G T C G A C T G A A C T G A G T C A G C T A C T G A G T C A C G T C T A G
T G C A G A C T G T C A C T G A A G C T C A G T C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PAX4/MA0068.2/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TAAKTAGAAGCTGCTG
CTAATTAG---------
 A C G T C A G T C T G A C G T A C A T G A G C T C G T A C T A G T C G A C T G A A C T G A G T C A G C T A C T G A G T C A C G T C T A G
A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TAAKTAGAAGCTGCTG-
YTAATTRAWWCCAGATGT
 A C G T C A G T C T G A C G T A C A T G A G C T C G T A C T A G T C G A C T G A A C T G A G T C A G C T A C T G A G T C A C G T C T A G A C G T
G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T

EMX2/MA0886.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TAAKTAGAAGCTGCTG
GCTAATTAGC--------
 A C G T A C G T C A G T C T G A C G T A C A T G A G C T C G T A C T A G T C G A C T G A A C T G A G T C A G C T A C T G A G T C A C G T C T A G
T C A G A T G C G A C T G T C A C G T A A C G T A C G T C G T A T C A G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TAAKTAGAAGCTGCTG
TTAATTAG---------
 A C G T C A G T C T G A C G T A C A T G A G C T C G T A C T A G T C G A C T G A A C T G A G T C A G C T A C T G A G T C A C G T C T A G
C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T