Information for 11-GBTTCRGCCA (Motif 12)

T A C G A T C G A C G T C G A T G T A C C T G A A C T G A G T C A G T C G C T A
Reverse Opposite:
C G A T A C T G A C T G A G T C G A C T A C T G C G T A T G C A T A G C A T G C
p-value:1e-6
log p-value:-1.398e+01
Information Content per bp:1.696
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif6.76%
Number of Background Sequences with motif843.1
Percentage of Background Sequences with motif1.84%
Average Position of motif in Targets46.5 +/- 26.0bp
Average Position of motif in Background51.3 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.73
Offset:5
Orientation:reverse strand
Alignment:GBTTCRGCCA-
-----TGCCAA
 T A C G A T C G A C G T C G A T G T A C C T G A A C T G A G T C A G T C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.70
Offset:3
Orientation:forward strand
Alignment:GBTTCRGCCA--
---CGTGCCAAG
 T A C G A T C G A C G T C G A T G T A C C T G A A C T G A G T C A G T C G C T A A C G T A C G T
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GBTTCRGCCA---
--GTCCGCCATTA
 T A C G A T C G A C G T C G A T G T A C C T G A A C T G A G T C A G T C G C T A A C G T A C G T A C G T
A C G T A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GBTTCRGCCA-
---BCAGACWA
 T A C G A T C G A C G T C G A T G T A C C T G A A C T G A G T C A G T C G C T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GBTTCRGCCA---
----CTGCCCGCA
 T A C G A T C G A C G T C G A T G T A C C T G A A C T G A G T C A G T C G C T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GBTTCRGCCA
----CAGCC-
 T A C G A T C G A C G T C G A T G T A C C T G A A C T G A G T C A G T C G C T A
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GBTTCRGCCA--
----TTGCCAAG
 T A C G A T C G A C G T C G A T G T A C C T G A A C T G A G T C A G T C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GBTTCRGCCA----
--ACTAGCCAATCA
 T A C G A T C G A C G T C G A T G T A C C T G A A C T G A G T C A G T C G C T A A C G T A C G T A C G T A C G T
A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GBTTCRGCCA---
---GGTGCCAAGT
 T A C G A T C G A C G T C G A T G T A C C T G A A C T G A G T C A G T C G C T A A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NRL/MA0842.1/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GBTTCRGCCA---
--GTCAGCANNTN
 T A C G A T C G A C G T C G A T G T A C C T G A A C T G A G T C A G T C G C T A A C G T A C G T A C G T
A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T