Information for 1-CCWTTGTYATGCA (Motif 1)

A T G C G A T C C G T A A C G T A C G T T C A G C G A T G A T C G T C A A G C T A C T G A G T C C T G A
Reverse Opposite:
G A C T T A C G T G A C C T G A A C G T C T A G C G T A A G T C C G T A C G T A G C A T C T A G T A C G
p-value:1e-57
log p-value:-1.314e+02
Information Content per bp:1.707
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif11.49%
Number of Background Sequences with motif47.1
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets48.4 +/- 15.8bp
Average Position of motif in Background44.5 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.87
Offset:1
Orientation:forward strand
Alignment:CCWTTGTYATGCA---
-CTTTGTTATGCAAAT
 A T G C G A T C C G T A A C G T A C G T T C A G C G A T G A T C G T C A A G C T A C T G A G T C C T G A A C G T A C G T A C G T
A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:CCWTTGTYATGCA---
-CATTGTTATGCAAAT
 A T G C G A T C C G T A A C G T A C G T T C A G C G A T G A T C G T C A A G C T A C T G A G T C C T G A A C G T A C G T A C G T
A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCWTTGTYATGCA
CCWTTGTY-----
 A T G C G A T C C G T A A C G T A C G T T C A G C G A T G A T C G T C A A G C T A C T G A G T C C T G A
A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCWTTGTYATGCA
CCATTGTTNY---
 A T G C G A T C C G T A A C G T A C G T T C A G C G A T G A T C G T C A A G C T A C T G A G T C C T G A
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CCWTTGTYATGCA
CCTTTGTT-----
 A T G C G A T C C G T A A C G T A C G T T C A G C G A T G A T C G T C A A G C T A C T G A G T C C T G A
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:6
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CCWTTGTYATGCA------
--TNNATTATGCATANNTT
 A T G C G A T C C G T A A C G T A C G T T C A G C G A T G A T C G T C A A G C T A C T G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Sox6/MA0515.1/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CCWTTGTYATGCA
CCATTGTTTT---
 A T G C G A T C C G T A A C G T A C G T T C A G C G A T G A T C G T C A A G C T A C T G A G T C C T G A
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCWTTGTYATGCA
CCWTTGTYYB---
 A T G C G A T C C G T A A C G T A C G T T C A G C G A T G A T C G T C A A G C T A C T G A G T C C T G A
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCWTTGTYATGCA
-CTTTGT------
 A T G C G A T C C G T A A C G T A C G T T C A G C G A T G A T C G T C A A G C T A C T G A G T C C T G A
A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCWTTGTYATGCA
CCATTGTTYB---
 A T G C G A T C C G T A A C G T A C G T T C A G C G A T G A T C G T C A A G C T A C T G A G T C C T G A
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T A C G T