Information for 2-TAAGCCACTA (Motif 5)

A C G T C T G A C G T A A C T G A G T C A G T C C G T A A T G C A G C T C G T A
Reverse Opposite:
A C G T C T G A A T C G A C G T A C T G A C T G A G T C A C G T G A C T C G T A
p-value:1e-10
log p-value:-2.329e+01
Information Content per bp:1.935
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif13.95%
Number of Background Sequences with motif63.4
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets42.5 +/- 29.4bp
Average Position of motif in Background49.3 +/- 45.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RHOXF1/MA0719.1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TAAGCCACTA
ATAATCCC---
 A C G T A C G T C T G A C G T A A C T G A G T C A G T C C G T A A T G C A G C T C G T A
G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TAAGCCACTA
CTAATCCTCTT
 A C G T A C G T C T G A C G T A A C T G A G T C A G T C C G T A A T G C A G C T C G T A
G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

PH0171.1_Nkx2-1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TAAGCCACTA------
TAAGCCACTTGAAATT
 A C G T C T G A C G T A A C T G A G T C A G T C C G T A A T G C A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

PH0113.1_Nkx2-4/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TAAGCCACTA------
TAAGCCACTTGAAATT
 A C G T C T G A C G T A A C T G A G T C A G T C C G T A A T G C A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

PH0115.1_Nkx2-6/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TAAGCCACTA------
TAAGCCACTTAACATT
 A C G T C T G A C G T A A C T G A G T C A G T C C G T A A T G C A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TAAGCCACTA
GCTAATCC----
 A C G T A C G T A C G T C T G A C G T A A C T G A G T C A G T C C G T A A T G C A G C T C G T A
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TAAGCCACTA
TAATCCCN--
 A C G T C T G A C G T A A C T G A G T C A G T C C G T A A T G C A G C T C G T A
C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TAAGCCACTA-
-AAACCACANN
 A C G T C T G A C G T A A C T G A G T C A G T C C G T A A T G C A G C T C G T A A C G T
A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

PH0114.1_Nkx2-5/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TAAGCCACTA------
TAAGCCACTTGAATTT
 A C G T C T G A C G T A A C T G A G T C A G T C C G T A A T G C A G C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TAAGCCACTA
TTAATCCC---
 A C G T A C G T C T G A C G T A A C T G A G T C A G T C C G T A A T G C A G C T C G T A
G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T A C G T