Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-173 | -3.996e+02 | 0.0000 | 440.0 | 53.46% | 5621.1 | 12.55% | motif file (matrix) |
svg |
2 |
| GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-165 | -3.819e+02 | 0.0000 | 306.0 | 37.18% | 2422.3 | 5.41% | motif file (matrix) |
svg |
3 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-154 | -3.552e+02 | 0.0000 | 257.0 | 31.23% | 1699.2 | 3.79% | motif file (matrix) |
svg |
4 |
| Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-113 | -2.612e+02 | 0.0000 | 500.0 | 60.75% | 10565.1 | 23.58% | motif file (matrix) |
svg |
5 |
| Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer | 1e-18 | -4.307e+01 | 0.0000 | 53.0 | 6.44% | 628.7 | 1.40% | motif file (matrix) |
svg |
6 |
| Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-16 | -3.850e+01 | 0.0000 | 114.0 | 13.85% | 2603.3 | 5.81% | motif file (matrix) |
svg |
7 |
| Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-13 | -3.096e+01 | 0.0000 | 103.0 | 12.52% | 2498.3 | 5.58% | motif file (matrix) |
svg |
8 |
| Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer | 1e-12 | -2.886e+01 | 0.0000 | 34.0 | 4.13% | 392.6 | 0.88% | motif file (matrix) |
svg |
9 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-11 | -2.675e+01 | 0.0000 | 81.0 | 9.84% | 1872.5 | 4.18% | motif file (matrix) |
svg |
10 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-10 | -2.461e+01 | 0.0000 | 69.0 | 8.38% | 1532.4 | 3.42% | motif file (matrix) |
svg |
11 |
| Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer | 1e-8 | -1.973e+01 | 0.0000 | 55.0 | 6.68% | 1225.1 | 2.73% | motif file (matrix) |
svg |
12 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-8 | -1.878e+01 | 0.0000 | 55.0 | 6.68% | 1260.5 | 2.81% | motif file (matrix) |
svg |
13 |
| Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer | 1e-7 | -1.790e+01 | 0.0000 | 8.0 | 0.97% | 23.9 | 0.05% | motif file (matrix) |
svg |
14 |
| Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer | 1e-7 | -1.680e+01 | 0.0000 | 57.0 | 6.93% | 1411.7 | 3.15% | motif file (matrix) |
svg |
15 |
| Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer | 1e-6 | -1.607e+01 | 0.0000 | 78.0 | 9.48% | 2252.4 | 5.03% | motif file (matrix) |
svg |
16 |
| Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer | 1e-6 | -1.581e+01 | 0.0000 | 57.0 | 6.93% | 1455.6 | 3.25% | motif file (matrix) |
svg |
17 |
| CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-6 | -1.525e+01 | 0.0000 | 19.0 | 2.31% | 243.7 | 0.54% | motif file (matrix) |
svg |
18 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-6 | -1.461e+01 | 0.0000 | 29.0 | 3.52% | 536.9 | 1.20% | motif file (matrix) |
svg |
19 |
| Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer | 1e-6 | -1.457e+01 | 0.0000 | 41.0 | 4.98% | 931.4 | 2.08% | motif file (matrix) |
svg |
20 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-6 | -1.424e+01 | 0.0000 | 74.0 | 8.99% | 2199.1 | 4.91% | motif file (matrix) |
svg |
21 |
| TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-5 | -1.239e+01 | 0.0001 | 39.0 | 4.74% | 946.4 | 2.11% | motif file (matrix) |
svg |
22 |
| TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-5 | -1.205e+01 | 0.0001 | 44.0 | 5.35% | 1144.7 | 2.56% | motif file (matrix) |
svg |
23 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-4 | -1.150e+01 | 0.0002 | 53.0 | 6.44% | 1519.5 | 3.39% | motif file (matrix) |
svg |
24 |
| TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-4 | -1.128e+01 | 0.0002 | 59.0 | 7.17% | 1772.7 | 3.96% | motif file (matrix) |
svg |
25 |
| SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-4 | -1.047e+01 | 0.0004 | 299.0 | 36.33% | 13324.1 | 29.74% | motif file (matrix) |
svg |
26 |
| RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer | 1e-4 | -1.002e+01 | 0.0006 | 12.0 | 1.46% | 156.8 | 0.35% | motif file (matrix) |
svg |
27 |
| TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer | 1e-3 | -9.188e+00 | 0.0014 | 8.0 | 0.97% | 76.6 | 0.17% | motif file (matrix) |
svg |
28 |
| Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-3 | -9.134e+00 | 0.0014 | 19.0 | 2.31% | 378.0 | 0.84% | motif file (matrix) |
svg |
29 |
| X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-3 | -8.800e+00 | 0.0019 | 12.0 | 1.46% | 178.9 | 0.40% | motif file (matrix) |
svg |
30 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-3 | -8.644e+00 | 0.0021 | 79.0 | 9.60% | 2828.9 | 6.31% | motif file (matrix) |
svg |
31 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-3 | -8.557e+00 | 0.0023 | 55.0 | 6.68% | 1790.7 | 4.00% | motif file (matrix) |
svg |
32 |
| Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer | 1e-3 | -8.549e+00 | 0.0023 | 12.0 | 1.46% | 183.8 | 0.41% | motif file (matrix) |
svg |
33 |
| PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer | 1e-3 | -8.238e+00 | 0.0029 | 13.0 | 1.58% | 218.5 | 0.49% | motif file (matrix) |
svg |
34 |
| COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer | 1e-3 | -7.547e+00 | 0.0057 | 88.0 | 10.69% | 3347.5 | 7.47% | motif file (matrix) |
svg |
35 |
| Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer | 1e-3 | -7.392e+00 | 0.0064 | 126.0 | 15.31% | 5158.6 | 11.52% | motif file (matrix) |
svg |
36 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-3 | -7.300e+00 | 0.0068 | 4.0 | 0.49% | 21.0 | 0.05% | motif file (matrix) |
svg |
37 |
| Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer | 1e-2 | -6.755e+00 | 0.0115 | 15.0 | 1.82% | 322.9 | 0.72% | motif file (matrix) |
svg |
38 |
| Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer | 1e-2 | -6.409e+00 | 0.0158 | 14.0 | 1.70% | 300.9 | 0.67% | motif file (matrix) |
svg |
39 |
| Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-2 | -6.231e+00 | 0.0184 | 86.0 | 10.45% | 3407.3 | 7.61% | motif file (matrix) |
svg |
40 |
| c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-2 | -6.143e+00 | 0.0196 | 26.0 | 3.16% | 756.5 | 1.69% | motif file (matrix) |
svg |
41 |
| Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer | 1e-2 | -5.615e+00 | 0.0323 | 11.0 | 1.34% | 226.3 | 0.51% | motif file (matrix) |
svg |
42 |
| Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer | 1e-2 | -5.517e+00 | 0.0348 | 76.0 | 9.23% | 3026.2 | 6.76% | motif file (matrix) |
svg |
43 |
| Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer | 1e-2 | -5.460e+00 | 0.0360 | 20.0 | 2.43% | 558.9 | 1.25% | motif file (matrix) |
svg |
44 |
| Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer | 1e-2 | -5.431e+00 | 0.0362 | 159.0 | 19.32% | 7099.0 | 15.85% | motif file (matrix) |
svg |
45 |
| MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-2 | -5.375e+00 | 0.0375 | 76.0 | 9.23% | 3044.2 | 6.80% | motif file (matrix) |
svg |
46 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.272e+00 | 0.0406 | 22.0 | 2.67% | 647.7 | 1.45% | motif file (matrix) |
svg |
47 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-2 | -5.140e+00 | 0.0453 | 58.0 | 7.05% | 2232.5 | 4.98% | motif file (matrix) |
svg |
48 |
| LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer | 1e-2 | -5.070e+00 | 0.0477 | 130.0 | 15.80% | 5715.4 | 12.76% | motif file (matrix) |
svg |
49 |
| Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-2 | -5.054e+00 | 0.0477 | 88.0 | 10.69% | 3660.7 | 8.17% | motif file (matrix) |
svg |
50 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-2 | -4.906e+00 | 0.0539 | 98.0 | 11.91% | 4168.0 | 9.30% | motif file (matrix) |
svg |
51 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-2 | -4.798e+00 | 0.0589 | 33.0 | 4.01% | 1141.9 | 2.55% | motif file (matrix) |
svg |
52 |
| Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer | 1e-2 | -4.774e+00 | 0.0591 | 132.0 | 16.04% | 5869.1 | 13.10% | motif file (matrix) |
svg |
53 |
| EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-2 | -4.745e+00 | 0.0597 | 90.0 | 10.94% | 3803.9 | 8.49% | motif file (matrix) |
svg |
54 |
| ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer | 1e-2 | -4.693e+00 | 0.0617 | 24.0 | 2.92% | 765.9 | 1.71% | motif file (matrix) |
svg |
55 |
| ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-2 | -4.689e+00 | 0.0617 | 43.0 | 5.22% | 1595.8 | 3.56% | motif file (matrix) |
svg |
56 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-2 | -4.679e+00 | 0.0617 | 24.0 | 2.92% | 766.7 | 1.71% | motif file (matrix) |
svg |
57 |
| Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-2 | -4.667e+00 | 0.0617 | 16.0 | 1.94% | 444.6 | 0.99% | motif file (matrix) |
svg |
58 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -4.607e+00 | 0.0627 | 57.0 | 6.93% | 2248.2 | 5.02% | motif file (matrix) |
svg |