Information for 4-AAATCCTGCHGGGCTC (Motif 4)

C G T A C T G A G T C A A C G T A G T C A G T C C G A T A C T G A T G C G C T A A C T G A C T G A C T G A T G C C G A T A G T C
Reverse Opposite:
C T A G C G T A A T C G A G T C A G T C A G T C C A G T A T C G A G T C C G T A A C T G A C T G C G T A A C G T A G C T A C G T
p-value:1e-13
log p-value:-3.059e+01
Information Content per bp:1.846
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.8 +/- 29.4bp
Average Position of motif in Background42.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AAATCCTGCHGGGCTC
GGCCYCCTGCTGDGH--
 A C G T C G T A C T G A G T C A A C G T A G T C A G T C C G A T A C T G A T G C G C T A A C T G A C T G A C T G A T G C C G A T A G T C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AAATCCTGCHGGGCTC
-NNTCCTGCTGTGNNN
 C G T A C T G A G T C A A C G T A G T C A G T C C G A T A C T G A T G C G C T A A C T G A C T G A C T G A T G C C G A T A G T C
A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AAATCCTGCHGGGCTC
-CCCCCTGCTGTG---
 C G T A C T G A G T C A A C G T A G T C A G T C C G A T A C T G A T G C G C T A A C T G A C T G A C T G A T G C C G A T A G T C
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AAATCCTGCHGGGCTC
ACATCCTGNT------
 C G T A C T G A G T C A A C G T A G T C A G T C C G A T A C T G A T G C G C T A A C T G A C T G A C T G A T G C C G A T A G T C
C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T A C G T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AAATCCTGCHGGGCTC
-TCNCCTGCTGNGNNN
 C G T A C T G A G T C A A C G T A G T C A G T C C G A T A C T G A T G C G C T A A C T G A C T G A C T G A T G C C G A T A G T C
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AAATCCTGCHGGGCTC
-TNTCCTGCTGTGNNG
 C G T A C T G A G T C A A C G T A G T C A G T C C G A T A C T G A T G C G C T A A C T G A C T G A C T G A T G C C G A T A G T C
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.60
Offset:4
Orientation:forward strand
Alignment:AAATCCTGCHGGGCTC
----CCTGCTGAGH--
 C G T A C T G A G T C A A C G T A G T C A G T C C G A T A C T G A T G C G C T A A C T G A C T G A C T G A T G C C G A T A G T C
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AAATCCTGCHGGGCTC
--TGCCCTNAGGGCA-
 C G T A C T G A G T C A A C G T A G T C A G T C C G A T A C T G A T G C G C T A A C T G A C T G A C T G A T G C C G A T A G T C
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AAATCCTGCHGGGCTC
--TGCCCNNAGGGCA-
 C G T A C T G A G T C A A C G T A G T C A G T C C G A T A C T G A T G C G C T A A C T G A C T G A C T G A T G C C G A T A G T C
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:AAATCCTGCHGGGCTC
--TGCCCTNAGGGCA-
 C G T A C T G A G T C A A C G T A G T C A G T C C G A T A C T G A T G C G C T A A C T G A C T G A C T G A T G C C G A T A G T C
A C G T A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T