Information for 3-GSSGCGNTTAAGAGGC (Motif 3)

A C T G A T G C A T C G A C T G A T G C A C T G A T C G C A G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A G T C
Reverse Opposite:
A C T G A T G C A G T C A C G T A G T C A C G T A G C T G T C A G T C A A T G C G T A C A T C G T A G C A T G C A T C G A G T C
p-value:1e-13
log p-value:-3.059e+01
Information Content per bp:1.775
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.8 +/- 17.3bp
Average Position of motif in Background25.8 +/- 17.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.63
Offset:7
Orientation:reverse strand
Alignment:GSSGCGNTTAAGAGGC-
-------TTGAGTGSTT
 A C T G A T G C A T C G A C T G A T G C A C T G A T C G C A G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.63
Offset:6
Orientation:forward strand
Alignment:GSSGCGNTTAAGAGGC
------BTBRAGTGSN
 A C T G A T G C A T C G A C T G A T G C A C T G A T C G C A G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:GSSGCGNTTAAGAGGC
------CTYRAGTGSY
 A C T G A T G C A T C G A C T G A T G C A C T G A T C G C A G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

NKX3-2/MA0122.2/Jaspar

Match Rank:4
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:GSSGCGNTTAAGAGGC
-------TTAAGTGGN
 A C T G A T G C A T C G A C T G A T G C A C T G A T C G C A G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

Nkx3-1/MA0124.2/Jaspar

Match Rank:5
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:GSSGCGNTTAAGAGGC
-------TTAAGTGGT
 A C T G A T G C A T C G A C T G A T G C A C T G A T C G C A G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GSSGCGNTTAAGAGGC----
---NTNNTTAAGTGGNTNAN
 A C T G A T G C A T C G A C T G A T G C A C T G A T C G C A G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:7
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:GSSGCGNTTAAGAGGC-
------CTTGAGTGGCT
 A C T G A T G C A T C G A C T G A T G C A C T G A T C G C A G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:GSSGCGNTTAAGAGGC
------NTCAAGTGGN
 A C T G A T G C A T C G A C T G A T G C A C T G A T C G C A G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GSSGCGNTTAAGAGGC----
---NTNNTTAAGTGGTTANN
 A C T G A T G C A T C G A C T G A T G C A C T G A T C G C A G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

Nkx2-5/MA0063.1/Jaspar

Match Rank:10
Score:0.53
Offset:7
Orientation:forward strand
Alignment:GSSGCGNTTAAGAGGC
-------TTAATTG--
 A C T G A T G C A T C G A C T G A T G C A C T G A T C G C A G T A C G T C T G A C G T A A C T G C G T A A C T G A T C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A A C G T G C A T C A T G A C G T A C G T