Information for 12-YAGATTAGCA (Motif 17)

G A T C C G T A A T C G C G T A C G A T G A C T G C T A A C T G A G T C C G T A
Reverse Opposite:
C G A T A C T G A G T C C G A T C T G A C G T A A C G T A T G C C G A T C T A G
p-value:1e-7
log p-value:-1.838e+01
Information Content per bp:1.763
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.16%
Number of Background Sequences with motif366.7
Percentage of Background Sequences with motif0.82%
Average Position of motif in Targets55.8 +/- 22.8bp
Average Position of motif in Background47.1 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:YAGATTAGCA--
CTCATTTGCATW
 G A T C C G T A A T C G C G T A C G A T G A C T G C T A A C T G A G T C C G T A A C G T A C G T
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:YAGATTAGCA--
BTVATTWGCATA
 G A T C C G T A A T C G C G T A C G A T G A C T G C T A A C T G A G T C C G T A A C G T A C G T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

POU3F4/MA0789.1/Jaspar

Match Rank:3
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:YAGATTAGCA--
---ATTTGCATA
 G A T C C G T A A T C G C G T A C G A T G A C T G C T A A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A

Pou2f3/MA0627.1/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-YAGATTAGCA-----
TNTAATTTGCATACNA
 A C G T G A T C C G T A A T C G C G T A C G A T G A C T G C T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:5
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-YAGATTAGCA-----
TNTAATTTGCATACNA
 A C G T G A T C C G T A A T C G C G T A C G A T G A C T G C T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.71
Offset:3
Orientation:forward strand
Alignment:YAGATTAGCA---
---ATTTGCATAA
 G A T C C G T A A T C G C G T A C G A T G A C T G C T A A C T G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

PH0144.1_Pou2f2/Jaspar

Match Rank:7
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-YAGATTAGCA-----
TNTAATTTGCATANNN
 A C G T G A T C C G T A A T C G C G T A C G A T G A C T G C T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

POU3F3/MA0788.1/Jaspar

Match Rank:8
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:YAGATTAGCA----
-AAATTAGCATAAT
 G A T C C G T A A T C G C G T A C G A T G A C T G C T A A C T G A G T C C G T A A C G T A C G T A C G T A C G T
A C G T G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T

POU2F2/MA0507.1/Jaspar

Match Rank:9
Score:0.69
Offset:0
Orientation:forward strand
Alignment:YAGATTAGCA---
TTCATTTGCATAT
 G A T C C G T A A T C G C G T A C G A T G A C T G C T A A C T G A G T C C G T A A C G T A C G T A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

POU5F1B/MA0792.1/Jaspar

Match Rank:10
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:YAGATTAGCA--
---ATTTGCATA
 G A T C C G T A A T C G C G T A C G A T G A C T G C T A A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A