Information for 1-BYTAATCCCMTYH (Motif 1)

A T C G G A C T C G A T C T G A C G T A A C G T A T G C G A T C A T G C G T A C G A C T A G C T G T A C
Reverse Opposite:
C A T G T C G A C T G A C A T G T A C G C T A G A T C G T G C A A C G T A G C T C G T A C T G A T A G C
p-value:1e-209
log p-value:-4.824e+02
Information Content per bp:1.568
Number of Target Sequences with motif387.0
Percentage of Target Sequences with motif47.02%
Number of Background Sequences with motif3252.2
Percentage of Background Sequences with motif7.26%
Average Position of motif in Targets50.2 +/- 22.0bp
Average Position of motif in Background50.0 +/- 36.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PITX3/MA0714.1/Jaspar

Match Rank:1
Score:0.96
Offset:0
Orientation:forward strand
Alignment:BYTAATCCCMTYH
CTTAATCCC----
 A T C G G A C T C G A T C T G A C G T A A C G T A T G C G A T C A T G C G T A C G A C T A G C T G T A C
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:2
Score:0.95
Offset:1
Orientation:forward strand
Alignment:BYTAATCCCMTYH
-TTAATCCC----
 A T C G G A C T C G A T C T G A C G T A A C G T A T G C G A T C A T G C G T A C G A C T A G C T G T A C
A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.95
Offset:0
Orientation:forward strand
Alignment:BYTAATCCCMTYH
GCTAATCC-----
 A T C G G A C T C G A T C T G A C G T A A C G T A T G C G A T C A T G C G T A C G A C T A G C T G T A C
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.95
Offset:0
Orientation:forward strand
Alignment:BYTAATCCCMTYH
NYTAATCCYB---
 A T C G G A C T C G A T C T G A C G T A A C G T A T G C G A T C A T G C G T A C G A C T A G C T G T A C
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:5
Score:0.94
Offset:1
Orientation:forward strand
Alignment:BYTAATCCCMTYH
-TTAATCCT----
 A T C G G A C T C G A T C T G A C G T A A C G T A T G C G A T C A T G C G T A C G A C T A G C T G T A C
A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T A C G T A C G T A C G T

Crx/MA0467.1/Jaspar

Match Rank:6
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:BYTAATCCCMTYH
-CTAATCCTCTT-
 A T C G G A C T C G A T C T G A C G T A A C G T A T G C G A T C A T G C G T A C G A C T A G C T G T A C
A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:BYTAATCCCMTYH
-YTAATCCY----
 A T C G G A C T C G A T C T G A C G T A A C G T A T G C G A T C A T G C G T A C G A C T A G C T G T A C
A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:8
Score:0.94
Offset:1
Orientation:forward strand
Alignment:BYTAATCCCMTYH
-TTAATCCG----
 A T C G G A C T C G A T C T G A C G T A A C G T A T G C G A T C A T G C G T A C G A C T A G C T G T A C
A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:9
Score:0.93
Offset:0
Orientation:forward strand
Alignment:BYTAATCCCMTYH
CCTAATCCGC---
 A T C G G A C T C G A T C T G A C G T A A C G T A T G C G A T C A T G C G T A C G A C T A G C T G T A C
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:10
Score:0.93
Offset:0
Orientation:forward strand
Alignment:BYTAATCCCMTYH
GCTAATCCCC---
 A T C G G A C T C G A T C T G A C G T A A C G T A T G C G A T C A T G C G T A C G A C T A G C T G T A C
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T A C G T A C G T