Information for 19-CTCGGACAGA (Motif 31)

A G T C A C G T A G T C A C T G C T A G C G T A A G T C C G T A A C T G C G T A
Reverse Opposite:
C G A T A G T C A C G T A C T G A C G T A G T C A G T C A C T G C G T A A C T G
p-value:1e-6
log p-value:-1.597e+01
Information Content per bp:1.964
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif11.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets47.7 +/- 13.2bp
Average Position of motif in Background54.2 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTCGGACAGA
CCAGGAACAG-
 A C G T A G T C A C G T A G T C A C T G C T A G C G T A A G T C C G T A A C T G C G T A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:2
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------CTCGGACAGA
AGTATTCTCGGTTGC-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C T G C T A G C G T A A G T C C G T A A C T G C G T A
T C A G T A C G A G C T G C T A G A C T C A G T G A T C A G C T G A T C T C A G T C A G C G A T G A C T C A T G A T G C A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CTCGGACAGA
----CACAGN
 A G T C A C G T A G T C A C T G C T A G C G T A A G T C C G T A A C T G C G T A
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

MEIS1/MA0498.2/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CTCGGACAGA
--TTGACAG-
 A G T C A C G T A G T C A C T G C T A G C G T A A G T C C G T A A C T G C G T A
A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T

PB0140.1_Irf6_2/Jaspar

Match Rank:5
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------CTCGGACAGA
ACCACTCTCGGTCAC-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C T G C T A G C G T A A G T C C G T A A C T G C G T A
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C A C G T

REST/MA0138.2/Jaspar

Match Rank:6
Score:0.56
Offset:-8
Orientation:forward strand
Alignment:--------CTCGGACAGA---
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C T G C T A G C G T A A G T C C G T A A C T G C G T A A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

PH0048.1_Hoxa13/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CTCGGACAGA--
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C T G C T A G C G T A A G T C C G T A A C T G C G T A A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CTCGGACAGA
-CCAGACAG-
 A G T C A C G T A G T C A C T G C T A G C G T A A G T C C G T A A C T G C G T A
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CTCGGACAGA
GCTCGGSCTC-
 A C G T A G T C A C G T A G T C A C T G C T A G C G T A A G T C C G T A A C T G C G T A
C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CTCGGACAGA
GCTCGTAAAAA
 A C G T A G T C A C G T A G T C A C T G C T A G C G T A A G T C C G T A A C T G C G T A
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A