Information for 1-CTGTCCRDGGTGCTGA (Motif 3)

A G T C A C G T T A C G A C G T A G T C A G T C C T G A C G A T C T A G A C T G A C G T A T C G A G T C A C G T A C T G C T G A
Reverse Opposite:
A G C T A G T C C G T A A C T G T A G C C G T A A G T C A G T C G C T A G A C T C T A G A C T G G T C A A G T C C G T A C T A G
p-value:1e-25
log p-value:-5.762e+01
Information Content per bp:1.834
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.02%
Number of Background Sequences with motif20.1
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets52.6 +/- 22.5bp
Average Position of motif in Background44.1 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.58
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.93
Offset:-4
Orientation:reverse strand
Alignment:----CTGTCCRDGGTGCTGA-
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T A C G T A G T C A C G T T A C G A C G T A G T C A G T C C T G A C G A T C T A G A C T G A C G T A T C G A G T C A C G T A C T G C T G A A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.93
Offset:-4
Orientation:forward strand
Alignment:----CTGTCCRDGGTGCTGA
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T A C G T A C G T A G T C A C G T T A C G A C G T A G T C A G T C C T G A C G A T C T A G A C T G A C G T A T C G A G T C A C G T A C T G C T G A
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:3
Score:0.61
Offset:10
Orientation:forward strand
Alignment:CTGTCCRDGGTGCTGA----
----------TGCTGACTCA
 A G T C A C G T T A C G A C G T A G T C A G T C C T G A C G A T C T A G A C T G A C G T A T C G A G T C A C G T A C T G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A

NRL/MA0842.1/Jaspar

Match Rank:4
Score:0.60
Offset:6
Orientation:forward strand
Alignment:CTGTCCRDGGTGCTGA-
------AATTTGCTGAC
 A G T C A C G T T A C G A C G T A G T C A G T C C T G A C G A T C T A G A C T G A C G T A T C G A G T C A C G T A C T G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C

MAFK/MA0496.1/Jaspar

Match Rank:5
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:CTGTCCRDGGTGCTGA-----
------AAANTGCTGACTNAG
 A G T C A C G T T A C G A C G T A G T C A G T C C T G A C G A T C T A G A C T G A C G T A T C G A G T C A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A G C A T C G A T A T C G G T A C A C G T A C T G C T G A A T G C G C A T G A T C C G T A C A T G

Mafb/MA0117.2/Jaspar

Match Rank:6
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CTGTCCRDGGTGCTGA--
------AAAATGCTGACT
 A G T C A C G T T A C G A C G T A G T C A G T C C T G A C G A T C T A G A C T G A C G T A T C G A G T C A C G T A C T G C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A G C T A C G T A G A C T A T C G G T A C G A C T C A T G C T G A A T G C C A G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:7
Score:0.57
Offset:8
Orientation:forward strand
Alignment:CTGTCCRDGGTGCTGA----
--------GGTGYTGACAGS
 A G T C A C G T T A C G A C G T A G T C A G T C C T G A C G A T C T A G A C T G A C G T A T C G A G T C A C G T A C T G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G

PB0041.1_Mafb_1/Jaspar

Match Rank:8
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CTGTCCRDGGTGCTGA------
-----AAATTTGCTGACTTAGA
 A G T C A C G T T A C G A C G T A G T C A G T C C T G A C G A T C T A G A C T G A C G T A T C G A G T C A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C T G A C G T A G C A T C A G T G C A T C A T G G T A C G C A T C A T G C G T A A G T C C G A T G C A T C T G A C T A G G T A C

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CTGTCCRDGGTGCTGA----
-----AAAWWTGCTGACWWD
 A G T C A C G T T A C G A C G T A G T C A G T C C T G A C G A T C T A G A C T G A C G T A T C G A G T C A C G T A C T G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C G T A C G T A G C T A G C A T G C A T T C A G G T A C G C A T C A T G C G T A A T G C G C A T G C A T C A T G

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTGTCCRDGGTGCTGA
CTGTTCCTGG------
 A G T C A C G T T A C G A C G T A G T C A G T C C T G A C G A T C T A G A C T G A C G T A T C G A G T C A C G T A C T G C T G A
T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T