Information for 13-TGCTAATTAG (Motif 24)

C G A T A T C G T G A C A C G T C G T A G T C A C G A T G C A T C T G A C T A G
Reverse Opposite:
G A T C A G C T C G T A C G T A A C G T C G A T T G C A A C T G T A G C G C T A
p-value:1e-8
log p-value:-2.047e+01
Information Content per bp:1.694
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif2.66%
Number of Background Sequences with motif285.8
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets47.2 +/- 29.5bp
Average Position of motif in Background49.3 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LHX6/MA0658.1/Jaspar

Match Rank:1
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:TGCTAATTAG-
-NCTAATTAGT
 C G A T A T C G T G A C A C G T C G T A G T C A C G A T G C A T C T G A C T A G A C G T
A C G T T C A G A G T C G A C T T C G A T C G A A C G T A G C T T C G A T C A G A G C T

PH0098.1_Lhx8/Jaspar

Match Rank:2
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---TGCTAATTAG----
CACCGCTAATTAGNNGN
 A C G T A C G T A C G T C G A T A T C G T G A C A C G T C G T A G T C A C G A T G C A T C T G A C T A G A C G T A C G T A C G T A C G T
G A T C T G C A G T A C G T A C T C A G T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A C T G A C T G A C T G C G A T

LHX2/MA0700.1/Jaspar

Match Rank:3
Score:0.87
Offset:1
Orientation:forward strand
Alignment:TGCTAATTAG-
-ACTAATTAAC
 C G A T A T C G T G A C A C G T C G T A G T C A C G A T G C A T C T G A C T A G A C G T
A C G T T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C

PH0155.1_Prrx2/Jaspar

Match Rank:4
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--TGCTAATTAG-----
AAAGCTAATTAGCGAAA
 A C G T A C G T C G A T A T C G T G A C A C G T C G T A G T C A C G A T G C A T C T G A C T A G A C G T A C G T A C G T A C G T A C G T
C G T A T G C A G T C A T C A G G A T C A G C T C T G A C G T A G A C T A G C T C T G A C T A G A G T C C A T G C T G A C G T A C T G A

EMX2/MA0886.1/Jaspar

Match Rank:5
Score:0.87
Offset:1
Orientation:forward strand
Alignment:TGCTAATTAG-
-GCTAATTAGC
 C G A T A T C G T G A C A C G T C G T A G T C A C G A T G C A T C T G A C T A G A C G T
A C G T T C A G A T G C G A C T G T C A C G T A A C G T A C G T C G T A T C A G A T G C

PH0097.1_Lhx6_2/Jaspar

Match Rank:6
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---TGCTAATTAG----
NNNCGCTAATTAGNNGA
 A C G T A C G T A C G T C G A T A T C G T G A C A C G T C G T A G T C A C G A T G C A T C T G A C T A G A C G T A C G T A C G T A C G T
T G C A G C T A G A T C G T A C T C A G G A T C G A C T T C G A C T G A A G C T A G C T C T G A C T A G A G C T C A T G A C T G C G T A

PH0032.1_Evx2/Jaspar

Match Rank:7
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---TGCTAATTAG----
CACCGCTAATTAGCGGT
 A C G T A C G T A C G T C G A T A T C G T G A C A C G T C G T A G T C A C G A T G C A T C T G A C T A G A C G T A C G T A C G T A C G T
A G T C T G C A G A T C G T A C T C A G A T G C A G C T T G C A C G T A A C G T A C G T C T G A A T C G A T G C A C T G A C G T G C A T

PH0131.1_Pax4/Jaspar

Match Rank:8
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---TGCTAATTAG----
NNGNGCTAATTAGNTNA
 A C G T A C G T A C G T C G A T A T C G T G A C A C G T C G T A G T C A C G A T G C A T C T G A C T A G A C G T A C G T A C G T A C G T
C A T G G A C T A T C G T C A G C T A G A G T C C A G T C G T A C T G A A G C T G A C T G T C A C T A G G C A T A G C T A T G C C G T A

PAX4/MA0068.2/Jaspar

Match Rank:9
Score:0.86
Offset:2
Orientation:forward strand
Alignment:TGCTAATTAG
--CTAATTAG
 C G A T A T C G T G A C A C G T C G T A G T C A C G A T G C A T C T G A C T A G
A C G T A C G T A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:10
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:TGCTAATTAG
-NCTAATTA-
 C G A T A T C G T G A C A C G T C G T A G T C A C G A T G C A T C T G A C T A G
A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T