Information for 12-GAGRAAMAAAGGG (Motif 15)

A T C G C T G A A T C G C T G A T G C A T C G A T G A C C G T A C G T A C T G A C T A G A C T G A C T G
Reverse Opposite:
G T A C A G T C A G T C A G C T A C G T A C G T A C T G A G C T A C G T A G C T A T G C A G C T A T G C
p-value:1e-11
log p-value:-2.709e+01
Information Content per bp:1.773
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.60%
Number of Background Sequences with motif58.3
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets65.9 +/- 25.5bp
Average Position of motif in Background47.3 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:GAGRAAMAAAGGG
--AAAACAAAGG-
 A T C G C T G A A T C G C T G A T G C A T C G A T G A C C G T A C G T A C T G A C T A G A C T G A C T G
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GAGRAAMAAAGGG
--GGAACAAAGR-
 A T C G C T G A A T C G C T G A T G C A T C G A T G A C C G T A C G T A C T G A C T A G A C T G A C T G
A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GAGRAAMAAAGGG
ARGAGGMCAAAATGW
 A C G T A C G T A T C G C T G A A T C G C T G A T G C A T C G A T G A C C G T A C G T A C T G A C T A G A C T G A C T G
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:GAGRAAMAAAGGG
----AACAAAGG-
 A T C G C T G A A T C G C T G A T G C A T C G A T G A C C G T A C G T A C T G A C T A G A C T G A C T G
A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:GAGRAAMAAAGGG
----RACAAWGG-
 A T C G C T G A A T C G C T G A T G C A T C G A T G A C C G T A C G T A C T G A C T A G A C T G A C T G
A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GAGRAAMAAAGGG---
AGAAGAACAAAGGACTA
 A C G T A T C G C T G A A T C G C T G A T G C A T C G A T G A C C G T A C G T A C T G A C T A G A C T G A C T G A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GAGRAAMAAAGGG---
ATAAGAACAAAGGACTA
 A C G T A T C G C T G A A T C G C T G A T G C A T C G A T G A C C G T A C G T A C T G A C T A G A C T G A C T G A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GAGRAAMAAAGGG
---GAACAATGGN
 A T C G C T G A A T C G C T G A T G C A T C G A T G A C C G T A C G T A C T G A C T A G A C T G A C T G
A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GAGRAAMAAAGGG
--VRRACAAWGG-
 A T C G C T G A A T C G C T G A T G C A T C G A T G A C C G T A C G T A C T G A C T A G A C T G A C T G
A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GAGRAAMAAAGGG
--AAAACAATGG-
 A T C G C T G A A T C G C T G A T G C A T C G A T G A C C G T A C G T A C T G A C T A G A C T G A C T G
A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T