Information for 11-CTGTAATTACAGC (Motif 11)

A G T C A C G T A C T G A G C T C G T A C G T A G A C T A C G T G T C A A G T C C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A C T G C A G T C G T A C G T A A C G T A C G T C T G A A G T C C G T A A C T G
p-value:1e-6
log p-value:-1.599e+01
Information Content per bp:1.938
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets37.0 +/- 23.4bp
Average Position of motif in Background54.0 +/- 17.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0022.1_Dlx3/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CTGTAATTACAGC--
NNNGGTAATTATNGNGN
 A C G T A C G T A G T C A C G T A C T G A G C T C G T A C G T A G A C T A C G T G T C A A G T C C G T A A C T G A G T C A C G T A C G T
C A T G C G A T A T G C C A T G T C A G G A C T G C T A C G T A A C G T C G A T C T G A G A C T G T A C A C T G A G T C C A T G T G C A

PH0023.1_Dlx4/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CTGTAATTACAGC--
GTCGGTAATTATNGNGN
 A C G T A C G T A G T C A C G T A C T G A G C T C G T A C G T A G A C T A C G T G T C A A G T C C G T A A C T G A G T C A C G T A C G T
C A T G C G A T A T G C C A T G A C T G G A C T C G T A C G T A A C G T G C A T C T G A G A C T G T C A A C T G A G T C C A T G T G A C

PH0072.1_Hoxc8/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTGTAATTACAGC--
ACNNTAATTACNNCAN
 A C G T A G T C A C G T A C T G A G C T C G T A C G T A G A C T A C G T G T C A A G T C C G T A A C T G A G T C A C G T A C G T
T G C A G T A C C T A G C A G T G A C T G T C A G C T A C A G T C A G T C T G A G T A C A G T C G A T C G T A C C G T A T G C A

PH0158.1_Rhox11_2/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CTGTAATTACAGC-----
-TCNCTTTACAGCGNNNT
 A G T C A C G T A C T G A G C T C G T A C G T A G A C T A C G T G T C A A G T C C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C G A T A G T C A T G C G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G G A T C C T A G C A G T G T A C A G T C C G A T

PH0061.1_Hoxb6/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CTGTAATTACAGC
TATTGGTAATTACCTT
 A C G T A C G T A C G T A G T C A C G T A C T G A G C T C G T A C G T A G A C T A C G T G T C A A G T C C G T A A C T G A G T C
G C A T G C T A C A G T C A G T A T C G A C T G A G C T G T C A C G T A C G A T C A G T C T G A G T A C T A G C C A G T A G C T

Rhox11/MA0629.1/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CTGTAATTACAGC-----
-TCNNTTTACAGCGNNNT
 A G T C A C G T A C T G A G C T C G T A C G T A G A C T A C G T G T C A A G T C C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CTGTAATTACAGC-----
-TCNNTTTACAGCGNNNT
 A G T C A C G T A C T G A G C T C G T A C G T A G A C T A C G T G T C A A G T C C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0103.1_Meox1/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CTGTAATTACAGC
CTGAGGTAATTACCNC
 A C G T A C G T A C G T A G T C A C G T A C T G A G C T C G T A C G T A G A C T A C G T G T C A A G T C C G T A A C T G A G T C
G A T C C G A T T C A G C T G A C A T G T A C G G A C T T G C A G C T A C A G T A C G T C T G A G T A C G T A C A C G T A G T C

Hoxd3/MA0912.1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTGTAATTACAGC--
ANGNTAATTANCNCAN
 A C G T A G T C A C G T A C T G A G C T C G T A C G T A G A C T A C G T G T C A A G T C C G T A A C T G A G T C A C G T A C G T
T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A

PH0079.1_Hoxd3/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTGTAATTACAGC--
ANGNTAATTANCNCAN
 A C G T A G T C A C G T A C T G A G C T C G T A C G T A G A C T A C G T G T C A A G T C C G T A A C T G A G T C A C G T A C G T
T C G A T A C G C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G C A G A T C G A C T G T A C C G T A C T G A