Information for 5-GAGTCAARRTAGTCAC (Motif 6)

A C T G G C T A T A C G C G A T A G T C G C T A C G T A T C G A C T G A A C G T C G T A A C T G G A C T A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G C G T A T G A C G A C T T C G A G A C T A G C T C G A T C G A T C T A G C G T A A G T C C G A T A G T C
p-value:1e-11
log p-value:-2.656e+01
Information Content per bp:1.672
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif2.91%
Number of Background Sequences with motif21.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets56.2 +/- 17.9bp
Average Position of motif in Background60.1 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax2/MA0067.1/Jaspar

Match Rank:1
Score:0.56
Offset:10
Orientation:forward strand
Alignment:GAGTCAARRTAGTCAC--
----------AGTCACGC
 A C T G G C T A T A C G C G A T A G T C G C T A C G T A T C G A C T G A A C G T C G T A A C T G G A C T A G T C C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:2
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GAGTCAARRTAGTCAC---
----NNAATTAGTCACGGT
 A C T G G C T A T A C G C G A T A G T C G C T A C G T A T C G A C T G A A C G T C G T A A C T G G A C T A G T C C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

RXRA::VDR/MA0074.1/Jaspar

Match Rank:3
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAGTCAARRTAGTCAC
GGGTCAACGAGTTCA-
 A C T G G C T A T A C G C G A T A G T C G C T A C G T A T C G A C T G A A C G T C G T A A C T G G A C T A G T C C G T A A G T C
C T A G A C T G A C T G A C G T A G T C C T G A G C A T A G T C C T A G C T A G A C T G A C G T C G A T A G T C T C G A A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:4
Score:0.51
Offset:7
Orientation:forward strand
Alignment:GAGTCAARRTAGTCAC
-------AAAAGTCAA
 A C T G G C T A T A C G C G A T A G T C G C T A C G T A T C G A C T G A A C G T C G T A A C T G G A C T A G T C C G T A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A

POL002.1_INR/Jaspar

Match Rank:5
Score:0.50
Offset:12
Orientation:forward strand
Alignment:GAGTCAARRTAGTCAC----
------------TCAGTCTT
 A C T G G C T A T A C G C G A T A G T C G C T A C G T A T C G A C T G A A C G T C G T A A C T G G A C T A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

FOS::JUN/MA0099.2/Jaspar

Match Rank:6
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-GAGTCAARRTAGTCAC
TGAGTCA----------
 A C G T A C T G G C T A T A C G C G A T A G T C G C T A C G T A T C G A C T G A A C G T C G T A A C T G G A C T A G T C C G T A A G T C
G A C T A T C G G C T A A C T G A C G T G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:7
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--GAGTCAARRTAGTCAC--
NTGACTCANTTTTTCCANTN
 A C G T A C G T A C T G G C T A T A C G C G A T A G T C G C T A C G T A T C G A C T G A A C G T C G T A A C T G G A C T A G T C C G T A A G T C A C G T A C G T
T C G A G C A T A C T G C G T A A T G C G C A T G T A C C G T A A G C T G C A T A G C T A G C T G A C T A G C T A G T C A G T C G C T A A G C T G A C T A T G C

PB0203.1_Zfp691_2/Jaspar

Match Rank:8
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:GAGTCAARRTAGTCAC---
--NTNNNAGGAGTCTCNTN
 A C T G G C T A T A C G C G A T A G T C G C T A C G T A T C G A C T G A A C G T C G T A A C T G G A C T A G T C C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:9
Score:0.50
Offset:11
Orientation:reverse strand
Alignment:GAGTCAARRTAGTCAC-
-----------GTCATN
 A C T G G C T A T A C G C G A T A G T C G C T A C G T A T C G A C T G A A C G T C G T A A C T G G A C T A G T C C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T G A T C C G T A A G C T A T C G

DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer

Match Rank:10
Score:0.49
Offset:2
Orientation:forward strand
Alignment:GAGTCAARRTAGTCAC-
--NWTAAYCYAATCAWN
 A C T G G C T A T A C G C G A T A G T C G C T A C G T A T C G A C T G A A C G T C G T A A C T G G A C T A G T C C G T A A G T C A C G T
A C G T A C G T C A T G G C A T C G A T C G T A C G T A G A T C A G T C A G C T C G T A C G T A A C G T A G T C C G T A C G T A G C A T