Information for 4-TGTSWCCATKCYGWTR (Motif 5)

A C G T A C T G A C G T T A C G G C A T A G T C A G T C T C G A A C G T A C T G A G T C A G C T A C T G C G A T C G A T C T A G
Reverse Opposite:
A G T C C G T A C G T A A G T C C T G A C T A G G T A C C G T A A C G T A C T G A C T G C G T A A T G C C G T A A G T C C G T A
p-value:1e-12
log p-value:-2.988e+01
Information Content per bp:1.832
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.82%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.0 +/- 26.3bp
Average Position of motif in Background16.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:1
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TGTSWCCATKCYGWTR
NTNNCGTATCCAAGTNN---
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T T A C G G C A T A G T C A G T C T C G A A C G T A C T G A G T C A G C T A C T G C G A T C G A T C T A G
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G A C G T A C G T A C G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:2
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------TGTSWCCATKCYGWTR-
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T T A C G G C A T A G T C A G T C T C G A A C G T A C T G A G T C A G C T A C T G C G A T C G A T C T A G A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

YY1/MA0095.2/Jaspar

Match Rank:3
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TGTSWCCATKCYGWTR
-GCNGCCATCTTG---
 A C G T A C T G A C G T T A C G G C A T A G T C A G T C T C G A A C G T A C T G A G T C A G C T A C T G C G A T C G A T C T A G
A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TGTSWCCATKCYGWTR
NGTTGCCATGGCAA--
 A C G T A C T G A C G T T A C G G C A T A G T C A G T C T C G A A C G T A C T G A G T C A G C T A C T G C G A T C G A T C T A G
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.53
Offset:6
Orientation:forward strand
Alignment:TGTSWCCATKCYGWTR
------CCTGCTGAGH
 A C G T A C T G A C G T T A C G G C A T A G T C A G T C T C G A A C G T A C T G A G T C A G C T A C T G C G A T C G A T C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:TGTSWCCATKCYGWTR
ATTTTCCATT------
 A C G T A C T G A C G T T A C G G C A T A G T C A G T C T C G A A C G T A C T G A G T C A G C T A C T G C G A T C G A T C T A G
C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:7
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--TGTSWCCATKCYGWTR
NNNGTAACTANGNNA---
 A C G T A C G T A C G T A C T G A C G T T A C G G C A T A G T C A G T C T C G A A C G T A C T G A G T C A G C T A C T G C G A T C G A T C T A G
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A A C G T A C G T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--TGTSWCCATKCYGWTR
AATGTATCAAT-------
 A C G T A C G T A C G T A C T G A C G T T A C G G C A T A G T C A G T C T C G A A C G T A C T G A G T C A G C T A C T G C G A T C G A T C T A G
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.50
Offset:0
Orientation:forward strand
Alignment:TGTSWCCATKCYGWTR
GGTTGCCATGGCAA--
 A C G T A C T G A C G T T A C G G C A T A G T C A G T C T C G A A C G T A C T G A G T C A G C T A C T G C G A T C G A T C T A G
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:10
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:TGTSWCCATKCYGWTR
BNTGDCCTTG------
 A C G T A C T G A C G T T A C G G C A T A G T C A G T C T C G A A C G T A C T G A G T C A G C T A C T G C G A T C G A T C T A G
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T