Information for 13-TTCAGTGCWTAATGAA (Motif 22)

A G C T A C G T A G T C C G T A T A C G A C G T A C T G A G T C C G A T A C G T C T G A C G T A C A G T A T C G C G T A C G T A
Reverse Opposite:
A C G T A C G T A T G C G C T A A C G T A G C T C G T A C G A T A C T G A G T C C G T A A G T C A C G T C T A G C G T A C T G A
p-value:1e-7
log p-value:-1.684e+01
Information Content per bp:1.834
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.5 +/- 17.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU4F2/MA0683.1/Jaspar

Match Rank:1
Score:0.61
Offset:4
Orientation:forward strand
Alignment:TTCAGTGCWTAATGAA----
----ATGCATAATTAATGAG
 A G C T A C G T A G T C C G T A T A C G A C G T A C T G A G T C C G A T A C G T C T G A C G T A C A G T A T C G C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G

POU4F1/MA0790.1/Jaspar

Match Rank:2
Score:0.59
Offset:4
Orientation:forward strand
Alignment:TTCAGTGCWTAATGAA--
----ATGAATAATTAATG
 A G C T A C G T A G T C C G T A T A C G A C G T A C T G A G T C C G A T A C G T C T G A C G T A C A G T A T C G C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G

PH0112.1_Nkx2-3/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TTCAGTGCWTAATGAA
CTTTAAGTACTTAATG--
 A C G T A C G T A G C T A C G T A G T C C G T A T A C G A C G T A C T G A G T C C G A T A C G T C T G A C G T A C A G T A T C G C G T A C G T A
G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G A C G T A C G T

POU4F3/MA0791.1/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TTCAGTGCWTAATGAA----
----ATGCATAATTAATGAG
 A G C T A C G T A G T C C G T A T A C G A C G T A C T G A G T C C G A T A C G T C T G A C G T A C A G T A T C G C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G

PH0148.1_Pou3f3/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TTCAGTGCWTAATGAA
AAAATATGCATAATAAA
 A C G T A G C T A C G T A G T C C G T A T A C G A C G T A C T G A G T C C G A T A C G T C T G A C G T A C A G T A T C G C G T A C G T A
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TTCAGTGCWTAATGAA
TTAAGTGCTT------
 A G C T A C G T A G T C C G T A T A C G A C G T A C T G A G T C C G A T A C G T C T G A C G T A C A G T A T C G C G T A C G T A
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TTCAGTGCWTAATGAA
----ATGCATAATTCA
 A G C T A C G T A G T C C G T A T A C G A C G T A C T G A G T C C G A T A C G T C T G A C G T A C A G T A T C G C G T A C G T A
A C G T A C G T A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

PH0004.1_Nkx3-2/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TTCAGTGCWTAATGAA
NTNNTTAAGTGGTTANN---
 A C G T A C G T A C G T A C G T A G C T A C G T A G T C C G T A T A C G A C G T A C T G A G T C C G A T A C G T C T G A C G T A C A G T A T C G C G T A C G T A
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G A C G T A C G T A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:9
Score:0.56
Offset:4
Orientation:forward strand
Alignment:TTCAGTGCWTAATGAA---
----ATGCATWATGCATRW
 A G C T A C G T A G T C C G T A T A C G A C G T A C T G A G T C C G A T A C G T C T G A C G T A C A G T A T C G C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

PB0005.1_Bbx_1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TTCAGTGCWTAATGAA
NANTTCATTGAATTA----
 A C G T A C G T A C G T A G C T A C G T A G T C C G T A T A C G A C G T A C T G A G T C C G A T A C G T C T G A C G T A C A G T A T C G C G T A C G T A
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A A C G T A C G T A C G T A C G T