Information for 5-AAVGGGAGCCTCCCCT (Motif 11)

T G C A C T G A T A C G A C T G A C T G A C T G C G T A A C T G A G T C A G T C A C G T A G T C A G T C A G T C A G T C C G A T
Reverse Opposite:
C G T A A C T G C T A G A C T G A C T G C G T A C T A G T C A G A G T C C G A T A G T C A G T C A G T C A G T C A G C T A C G T
p-value:1e-9
log p-value:-2.131e+01
Information Content per bp:1.815
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.7 +/- 24.9bp
Average Position of motif in Background35.5 +/- 13.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AAVGGGAGCCTCCCCT
---GGGGGAATCCCC-
 T G C A C T G A T A C G A C T G A C T G A C T G C G T A A C T G A G T C A G T C A C G T A G T C A G T C A G T C A G T C C G A T
A C G T A C G T A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:AAVGGGAGCCTCCCCT
---AGGGGAATCCCCT
 T G C A C T G A T A C G A C T G A C T G A C T G C G T A A C T G A G T C A G T C A C G T A G T C A G T C A G T C A G T C C G A T
A C G T A C G T A C G T T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:AAVGGGAGCCTCCCCT
---AGGGGATTCCCCT
 T G C A C T G A T A C G A C T G A C T G A C T G C G T A A C T G A G T C A G T C A C G T A G T C A G T C A G T C A G T C C G A T
A C G T A C G T A C G T T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AAVGGGAGCCTCCCCT
---GGGAATTTCC---
 T G C A C T G A T A C G A C T G A C T G A C T G C G T A A C T G A G T C A G T C A C G T A G T C A G T C A G T C A G T C C G A T
A C G T A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AAVGGGAGCCTCCCCT
---GGGAATTTCC---
 T G C A C T G A T A C G A C T G A C T G A C T G C G T A A C T G A G T C A G T C A C G T A G T C A G T C A G T C A G T C C G A T
A C G T A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:6
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AAVGGGAGCCTCCCCT
--NGGGGATTTCCC--
 T G C A C T G A T A C G A C T G A C T G A C T G C G T A A C T G A G T C A G T C A C G T A G T C A G T C A G T C A G T C C G A T
A C G T A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AAVGGGAGCCTCCCCT
---GGGGATTTCC---
 T G C A C T G A T A C G A C T G A C T G A C T G C G T A A C T G A G T C A G T C A C G T A G T C A G T C A G T C A G T C C G A T
A C G T A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:8
Score:0.61
Offset:10
Orientation:reverse strand
Alignment:AAVGGGAGCCTCCCCT
----------TCCCCA
 T G C A C T G A T A C G A C T G A C T G A C T G C G T A A C T G A G T C A G T C A C G T A G T C A G T C A G T C A G T C C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A

REL/MA0101.1/Jaspar

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AAVGGGAGCCTCCCCT
---GGGGATTTCC---
 T G C A C T G A T A C G A C T G A C T G A C T G C G T A A C T G A G T C A G T C A C G T A G T C A G T C A G T C A G T C C G A T
A C G T A C G T A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T

PB0201.1_Zfp281_2/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AAVGGGAGCCTCCCCT
NNNATTGGGGGTNTCCT--
 A C G T A C G T A C G T T G C A C T G A T A C G A C T G A C T G A C T G C G T A A C T G A G T C A G T C A C G T A G T C A G T C A G T C A G T C C G A T
A G T C G C T A G C T A G C T A C G A T C G A T A C T G A C T G A C T G C A T G A C T G A G C T G T A C G C A T G T A C G T A C G C A T A C G T A C G T