Information for 1-GTGGCTGGTTSCTCTT (Motif 1)

A C T G A C G T A C T G C T A G A G T C A C G T A C T G A C T G A C G T A G C T A T C G G T A C A C G T A G T C C G A T C G A T
Reverse Opposite:
G C T A C G T A C T A G C G T A A C T G A T G C C T G A T G C A G T A C T A G C C G T A T A C G A G T C G T A C C G T A T A G C
p-value:1e-11
log p-value:-2.587e+01
Information Content per bp:1.707
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.97%
Number of Background Sequences with motif12.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets56.7 +/- 20.0bp
Average Position of motif in Background64.8 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:1
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GTGGCTGGTTSCTCTT
CGTGGGTGGTCC-----
 A C G T A C T G A C G T A C T G C T A G A G T C A C G T A C T G A C T G A C G T A G C T A T C G G T A C A C G T A G T C C G A T C G A T
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C A C G T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GTGGCTGGTTSCTCTT
-TGATTGGCTANN---
 A C T G A C G T A C T G C T A G A G T C A C G T A C T G A C T G A C G T A G C T A T C G G T A C A C G T A G T C C G A T C G A T
A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GTGGCTGGTTSCTCTT
CTGATTGGTCNATTT-
 A C T G A C G T A C T G C T A G A G T C A C G T A C T G A C T G A C G T A G C T A T C G G T A C A C G T A G T C C G A T C G A T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GTGGCTGGTTSCTCTT
TWGTCTGV--------
 A C T G A C G T A C T G C T A G A G T C A C G T A C T G A C T G A C G T A G C T A T C G G T A C A C G T A G T C C G A T C G A T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----GTGGCTGGTTSCTCTT
NNTNNTGTCTGGNNTNG---
 A C G T A C G T A C G T A C G T A C T G A C G T A C T G C T A G A G T C A C G T A C T G A C T G A C G T A G C T A T C G G T A C A C G T A G T C C G A T C G A T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:GTGGCTGGTTSCTCTT----
---NSTGTTTRCWCAGBNNN
 A C T G A C G T A C T G C T A G A G T C A C G T A C T G A C T G A C G T A G C T A T C G G T A C A C G T A G T C C G A T C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G

FOXA1/MA0148.3/Jaspar

Match Rank:7
Score:0.49
Offset:1
Orientation:forward strand
Alignment:GTGGCTGGTTSCTCTT
-TCCATGTTTACTTTG
 A C T G A C G T A C T G C T A G A G T C A C G T A C T G A C T G A C G T A G C T A T C G G T A C A C G T A G T C C G A T C G A T
A C G T G A C T A G T C A T G C G C T A C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T C A T G

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:8
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:GTGGCTGGTTSCTCTT
-----TGTTTACTTT-
 A C T G A C G T A C T G C T A G A G T C A C G T A C T G A C T G A C G T A G C T A T C G G T A C A C G T A G T C C G A T C G A T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:GTGGCTGGTTSCTCTT-
--GYCTGGYYTNTGTCA
 A C T G A C G T A C T G C T A G A G T C A C G T A C T G A C T G A C G T A G C T A T C G G T A C A C G T A G T C C G A T C G A T A C G T
A C G T A C G T A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

SPIB/MA0081.1/Jaspar

Match Rank:10
Score:0.49
Offset:8
Orientation:reverse strand
Alignment:GTGGCTGGTTSCTCTT
--------TTCCTCT-
 A C T G A C G T A C T G C T A G A G T C A C G T A C T G A C T G A C G T A G C T A T C G G T A C A C G T A G T C C G A T C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G A T G A T C A G T C A C G T A T G C C G A T A C G T