Information for 16-KCTCSTWAAGSAG (Motif 33)

A C T G A G T C A C G T A G T C A T G C A C G T C G A T C G T A C G T A A C T G A T C G C G T A A C T G
Reverse Opposite:
A G T C A C G T A T G C A G T C A C G T C G A T C G T A C G T A A T C G A C T G C G T A A C T G T G A C
p-value:1e-6
log p-value:-1.439e+01
Information Content per bp:1.874
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets29.0 +/- 15.1bp
Average Position of motif in Background58.5 +/- 0.5bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:KCTCSTWAAGSAG
GCTCGTAAAAA--
 A C T G A G T C A C G T A G T C A T G C A C G T C G A T C G T A C G T A A C T G A T C G C G T A A C T G
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---KCTCSTWAAGSAG
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A C T G A G T C A C G T A G T C A T G C A C G T C G A T C G T A C G T A A C T G A T C G C G T A A C T G
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---KCTCSTWAAGSAG
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A C T G A G T C A C G T A G T C A T G C A C G T C G A T C G T A C G T A A C T G A T C G C G T A A C T G
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

Hoxa11/MA0911.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:KCTCSTWAAGSAG
GGTCGTAAAATT-
 A C T G A G T C A C G T A G T C A T G C A C G T C G A T C G T A C G T A A C T G A T C G C G T A A C T G
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T A C G T

HOXC11/MA0651.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:KCTCSTWAAGSAG
GGTCGTAAAAT--
 A C T G A G T C A C G T A G T C A T G C A C G T C G A T C G T A C G T A A C T G A T C G C G T A A C T G
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:KCTCSTWAAGSAG
-GTCGTAAAAT--
 A C T G A G T C A C G T A G T C A T G C A C G T C G A T C G T A C G T A A C T G A T C G C G T A A C T G
A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---KCTCSTWAAGSAG
TAAAGTCGTAAAATAG
 A C G T A C G T A C G T A C T G A G T C A C G T A G T C A T G C A C G T C G A T C G T A C G T A A C T G A T C G C G T A A C T G
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

HOXD11/MA0908.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:KCTCSTWAAGSAG
-GTCGTAAAAA--
 A C T G A G T C A C G T A G T C A T G C A C G T C G A T C G T A C G T A A C T G A T C G C G T A A C T G
A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T A C G T

PH0065.1_Hoxc10/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---KCTCSTWAAGSAG
TAAAGTCGTAAAACGT
 A C G T A C G T A C G T A C T G A G T C A C G T A G T C A T G C A C G T C G A T C G T A C G T A A C T G A T C G C G T A A C T G
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----KCTCSTWAAGSAG
NNNACCTCATTATCNTN
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A T G C A C G T C G A T C G T A C G T A A C T G A T C G C G T A A C T G
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C