Information for 9-ATAATTTCAT (Motif 22)

C T G A C A G T G T C A G C T A A C G T C A G T G C A T A T G C G T C A A G C T
Reverse Opposite:
T C G A A C G T T A C G C G T A G T C A T G C A C G A T C A G T G T C A G A C T
p-value:1e-9
log p-value:-2.175e+01
Information Content per bp:1.684
Number of Target Sequences with motif68.0
Percentage of Target Sequences with motif9.19%
Number of Background Sequences with motif1961.0
Percentage of Background Sequences with motif4.00%
Average Position of motif in Targets48.4 +/- 27.4bp
Average Position of motif in Background49.9 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:1
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:ATAATTTCAT---
-TAATTNVATTAN
 C T G A C A G T G T C A G C T A A C G T C A G T G C A T A T G C G T C A A G C T A C G T A C G T A C G T
A C G T G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G

PROP1/MA0715.1/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:ATAATTTCAT--
-TAATTAAATTA
 C T G A C A G T G T C A G C T A A C G T C A G T G C A T A T G C G T C A A G C T A C G T A C G T
A C G T G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:ATAATTTCAT---
-TAATYNRATTAR
 C T G A C A G T G T C A G C T A A C G T C A G T G C A T A T G C G T C A A G C T A C G T A C G T A C G T
A C G T G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G

PB0169.1_Sox15_2/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-ATAATTTCAT----
TNGAATTTCATTNAN
 A C G T C T G A C A G T G T C A G C T A A C G T C A G T G C A T A T G C G T C A A G C T A C G T A C G T A C G T A C G T
A G C T A T G C C T A G C T G A G T C A G A C T C A G T G C A T T G A C C T G A C A G T G A C T A G T C T G C A T G C A

JUND(var.2)/MA0492.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ATAATTTCAT----
NATGACATCATCNNN
 A C G T C T G A C A G T G T C A G C T A A C G T C A G T G C A T A T G C G T C A A G C T A C G T A C G T A C G T A C G T
A C T G T C G A A C G T A C T G C T G A A G T C T C G A A C G T G T A C C G T A A G C T A G T C G C A T G A C T G C A T

Phox2b/MA0681.1/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:ATAATTTCAT--
-TAATTAAATTA
 C T G A C A G T G T C A G C T A A C G T C A G T G C A T A T G C G T C A A G C T A C G T A C G T
A C G T G C A T C G T A C T G A A G C T A G C T C T G A T C G A C T G A A G C T G A C T C G T A

PHOX2A/MA0713.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:ATAATTTCAT--
-TAATTTAATTA
 C T G A C A G T G T C A G C T A A C G T C A G T G C A T A T G C G T C A A G C T A C G T A C G T
A C G T G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

PH0056.1_Hoxa9/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ATAATTTCAT------
ANTAATTTTATGGCCGN
 A C G T C T G A C A G T G T C A G C T A A C G T C A G T G C A T A T G C G T C A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

JUN/MA0488.1/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ATAATTTCAT
AAGATGATGTCAT
 A C G T A C G T A C G T C T G A C A G T G T C A G C T A A C G T C A G T G C A T A T G C G T C A A G C T
C G T A C G T A C T A G T C G A A C G T A C T G C G T A A C G T A T C G G A C T G T A C C G T A A G C T

PH0022.1_Dlx3/Jaspar

Match Rank:10
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----ATAATTTCAT--
TCGCGATAATTACCGAC
 A C G T A C G T A C G T A C G T A C G T C T G A C A G T G T C A G C T A A C G T C A G T G C A T A T G C G T C A A G C T A C G T A C G T
A C G T G T A C T C A G T G A C C A G T C T G A A G C T C G T A C G T A A C G T C A G T C T G A A G T C G T A C T A C G G C T A G T A C