Information for 6-CCCTAACTAG (Motif 20)

G T A C A G T C A G T C A G C T G T C A C G T A A G T C C G A T T C G A A C T G
Reverse Opposite:
A G T C A C G T C G T A A C T G A C G T A C G T C T G A C T A G C T A G A C T G
p-value:1e-9
log p-value:-2.267e+01
Information Content per bp:1.859
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.62%
Number of Background Sequences with motif57.3
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets59.2 +/- 25.5bp
Average Position of motif in Background51.3 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HMBOX1/MA0895.1/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CCCTAACTAG-
-GTTAACTAGN
 G T A C A G T C A G T C A G C T G T C A C G T A A G T C C G A T T C G A A C T G A C G T
A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CCCTAACTAG-----
GANGTTAACTAGTTTNN
 A C G T A C G T G T A C A G T C A G T C A G C T G T C A C G T A A G T C C G A T T C G A A C T G A C G T A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

LBX1/MA0618.1/Jaspar

Match Rank:3
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CCCTAACTAG
--TTAATTAG
 G T A C A G T C A G T C A G C T G T C A C G T A A G T C C G A T T C G A A C T G
A C G T A C G T C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G

PH0089.1_Isx/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCCTAACTAG----
ACNNCTAATTAGNNNN
 A C G T A C G T G T A C A G T C A G T C A G C T G T C A C G T A A G T C C G A T T C G A A C T G A C G T A C G T A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

PH0098.1_Lhx8/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CCCTAACTAG-----
ACCCCTAATTAGCGGTG
 A C G T A C G T G T A C A G T C A G T C A G C T G T C A C G T A A G T C C G A T T C G A A C T G A C G T A C G T A C G T A C G T A C G T
G C T A T G A C T G A C T G A C T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A G T C C A T G C A T G A C G T C T A G

PH0034.1_Gbx2/Jaspar

Match Rank:6
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CCCTAACTAG----
AANCGCTAATTAGCNNN
 A C G T A C G T A C G T G T A C A G T C A G T C A G C T G T C A C G T A A G T C C G A T T C G A A C T G A C G T A C G T A C G T A C G T
G T C A T G C A G A C T A T G C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C A C T G A T G C G C A T

PH0033.1_Gbx1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCCTAACTAG-----
TNCACTAATTAGTNNNN
 A C G T A C G T G T A C A G T C A G T C A G C T G T C A C G T A A G T C C G A T T C G A A C T G A C G T A C G T A C G T A C G T A C G T
C G A T T G C A T G A C T G C A G T A C G A C T G T C A C T G A A G C T A C G T C T G A A C T G A G C T A C T G T A C G G A T C C G T A

PH0039.1_Mnx1/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CCCTAACTAG---
NNNCACTAATTANTNN
 A C G T A C G T A C G T G T A C A G T C A G T C A G C T G T C A C G T A A G T C C G A T T C G A A C T G A C G T A C G T A C G T
A T G C C T A G A T G C G A T C T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A T A C G A C G T T G C A T G A C

PH0032.1_Evx2/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCCTAACTAG-----
ANCGCTAATTAGCGGTN
 A C G T A C G T G T A C A G T C A G T C A G C T G T C A C G T A A G T C C G A T T C G A A C T G A C G T A C G T A C G T A C G T A C G T
C G T A T G A C T G A C T A C G T A G C A G C T T G C A C G T A A C G T A C G T C T G A T A C G A G T C C A T G C T A G A C G T T C A G

PAX4/MA0068.2/Jaspar

Match Rank:10
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCCTAACTAG
--CTAATTAG
 G T A C A G T C A G T C A G C T G T C A C G T A A G T C C G A T T C G A A C T G
A C G T A C G T A G T C C A G T C G T A G T C A A C G T C G A T G T C A T C A G