Information for 2-ASCGCCCTCTAGTGGY (Motif 2)

C T G A A T G C G A T C T C A G G A T C G T A C G T A C A G C T A G T C A G C T C G T A T A C G C G A T A C T G C T A G A G C T
Reverse Opposite:
T C G A A G T C A G T C C G T A A G T C G C A T C T G A T A C G C T G A C A T G A C T G C T A G A G T C C T A G T A C G G A C T
p-value:1e-30
log p-value:-7.033e+01
Information Content per bp:1.677
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif4.29%
Number of Background Sequences with motif106.6
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets51.9 +/- 22.5bp
Average Position of motif in Background49.1 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--ASCGCCCTCTAGTGGY--
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T C T G A A T G C G A T C T C A G G A T C G T A C G T A C A G C T A G T C A G C T C G T A T A C G C G A T A C T G C T A G A G C T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-ASCGCCCTCTAGTGGY--
TAGCGCCCCCTGGTGGCCA
 A C G T C T G A A T G C G A T C T C A G G A T C G T A C G T A C A G C T A G T C A G C T C G T A T A C G C G A T A C T G C T A G A G C T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.88
Offset:-4
Orientation:forward strand
Alignment:----ASCGCCCTCTAGTGGY
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T C T G A A T G C G A T C T C A G G A T C G T A C G T A C A G C T A G T C A G C T C G T A T A C G C G A T A C T G C T A G A G C T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

YY1(Zf)/Promoter/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ASCGCCCTCTAGTGGY
GCCGCCATCTTG----
 C T G A A T G C G A T C T C A G G A T C G T A C G T A C A G C T A G T C A G C T C G T A T A C G C G A T A C T G C T A G A G C T
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---ASCGCCCTCTAGTGGY
GGTCCCGCCCCCTTCTC--
 A C G T A C G T A C G T C T G A A T G C G A T C T C A G G A T C G T A C G T A C A G C T A G T C A G C T C G T A T A C G C G A T A C T G C T A G A G C T
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:ASCGCCCTCTAGTGGY
GCNGCCATCTTG----
 C T G A A T G C G A T C T C A G G A T C G T A C G T A C A G C T A G T C A G C T C G T A T A C G C G A T A C T G C T A G A G C T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:ASCGCCCTCTAGTGGY
------NTCAAGTGGN
 C T G A A T G C G A T C T C A G G A T C G T A C G T A C A G C T A G T C A G C T C G T A T A C G C G A T A C T G C T A G A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:8
Score:0.55
Offset:11
Orientation:reverse strand
Alignment:ASCGCCCTCTAGTGGY-
-----------GTGGAT
 C T G A A T G C G A T C T C A G G A T C G T A C G T A C A G C T A G T C A G C T C G T A T A C G C G A T A C T G C T A G A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:ASCGCCCTCTAGTGGY---
--NANTTTCAAGTGGTTAN
 C T G A A T G C G A T C T C A G G A T C G T A C G T A C A G C T A G T C A G C T C G T A T A C G C G A T A C T G C T A G A G C T A C G T A C G T A C G T
A C G T A C G T G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:10
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:ASCGCCCTCTAGTGGY---
-------NNHTGTGGTTWN
 C T G A A T G C G A T C T C A G G A T C G T A C G T A C A G C T A G T C A G C T C G T A T A C G C G A T A C T G C T A G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G