Information for 9-AGRTGTTMTTTTA (Motif 12)

C G T A A C T G T C A G C G A T A T C G G A C T A C G T T G C A A C G T A C G T A G C T C A G T C G T A
Reverse Opposite:
C G A T G T C A T C G A G T C A C G T A A C G T G T C A C T G A A T G C G C T A A G T C T G A C G C A T
p-value:1e-11
log p-value:-2.690e+01
Information Content per bp:1.647
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.86%
Number of Background Sequences with motif195.6
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets46.3 +/- 27.1bp
Average Position of motif in Background48.7 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)-2.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0122.1_Foxk1_2/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGRTGTTMTTTTA--
NNNTGTTGTTGTTNG
 C G T A A C T G T C A G C G A T A T C G G A C T A C G T T G C A A C G T A C G T A G C T C A G T C G T A A C G T A C G T
C T G A C A T G C T A G G C A T C T A G G C A T A C G T C T A G A G C T A C G T C T A G G A C T C A G T C G A T C A T G

PB0123.1_Foxl1_2/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGRTGTTMTTTTA----
-NNTTTTGTTTTGATNT
 C G T A A C T G T C A G C G A T A T C G G A C T A C G T T G C A A C G T A C G T A G C T C A G T C G T A A C G T A C G T A C G T A C G T
A C G T C A G T C A T G G A C T C A G T G C A T G C A T T C A G A C G T C A G T C G A T C A G T C T A G G C T A G C A T G C T A C G A T

MEF2C/MA0497.1/Jaspar

Match Rank:3
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:AGRTGTTMTTTTA-----
---TTCTATTTTTAGNNN
 C G T A A C T G T C A G C G A T A T C G G A C T A C G T T G C A A C G T A C G T A G C T C A G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:4
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AGRTGTTMTTTTA-
----RTTATGYAAB
 C G T A A C T G T C A G C G A T A T C G G A C T A C G T T G C A A C G T A C G T A G C T C A G T C G T A A C G T
A C G T A C G T A C G T A C G T T C A G G A C T C A G T C T G A A G C T C T A G G A C T T G C A C T G A A G T C

PB0120.1_Foxj1_2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGRTGTTMTTTTA-
GTNTTGTTGTGANNT
 A C G T C G T A A C T G T C A G C G A T A T C G G A C T A C G T T G C A A C G T A C G T A G C T C A G T C G T A A C G T
C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AGRTGTTMTTTTA---
----KCTATTTTTRGH
 C G T A A C T G T C A G C G A T A T C G G A C T A C G T T G C A A C G T A C G T A G C T C A G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C

PB0119.1_Foxa2_2/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGRTGTTMTTTTA
NCNTTTGTTATTTNN
 A C G T A C G T C G T A A C T G T C A G C G A T A T C G G A C T A C G T T G C A A C G T A C G T A G C T C A G T C G T A
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:AGRTGTTMTTTTA-----
--------TTTTATTRGN
 C G T A A C T G T C A G C G A T A T C G G A C T A C G T T G C A A C G T A C G T A G C T C A G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

TBX5/MA0807.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGRTGTTMTTTTA
AGGTGTGA-----
 C G T A A C T G T C A G C G A T A T C G G A C T A C G T T G C A A C G T A C G T A G C T C A G T C G T A
C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A A C G T A C G T A C G T A C G T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:AGRTGTTMTTTTA---
----GCTATTTTTAGC
 C G T A A C T G T C A G C G A T A T C G G A C T A C G T T G C A A C G T A C G T A G C T C A G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G A G T C A G C T C G T A C G A T C G A T G C A T G C A T C G A T C T G A C A T G T G A C