Information for 2-CAGAGCACCTTGC (Motif 6)

A G T C C G T A A C T G C G T A A C T G G T A C C G T A G T A C A G T C G A C T A C G T A C T G A T G C
Reverse Opposite:
T A C G A G T C C G T A C T G A C T A G A C T G A C G T A C T G G T A C C G A T A G T C A C G T A C T G
p-value:1e-12
log p-value:-2.940e+01
Information Content per bp:1.840
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif17.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets51.7 +/- 24.2bp
Average Position of motif in Background54.3 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0099.1_Zfp691_1/Jaspar

Match Rank:1
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CAGAGCACCTTGC
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C T G G T A C C G T A G T A C A G T C G A C T A C G T A C T G A T G C
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

SOX8/MA0868.1/Jaspar

Match Rank:2
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGCACCTTGC-
AACACTGCACATTGTT
 A C G T A C G T A G T C C G T A A C T G C G T A A C T G G T A C C G T A G T A C A G T C G A C T A C G T A C T G A T G C A C G T
C T G A C G T A A G T C G T C A G T A C A C G T T A C G T G A C C G T A G A T C G T C A A C G T A G C T A C T G A C G T C G A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CAGAGCACCTTGC------
---TGGACTTTGNNCTNTG
 A G T C C G T A A C T G C G T A A C T G G T A C C G T A G T A C A G T C G A C T A C G T A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

HNF4G/MA0484.1/Jaspar

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CAGAGCACCTTGC-----
---TGGACTTTGNNCTCN
 A G T C C G T A A C T G C G T A A C T G G T A C C G T A G T A C A G T C G A C T A C G T A C T G A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CAGAGCACCTTGC
ACAAAGGNBCCT--
 A C G T A G T C C G T A A C T G C G T A A C T G G T A C C G T A G T A C A G T C G A C T A C G T A C T G A T G C
G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAGAGCACCTTGC--
VAGRACAKWCTGTYC
 A G T C C G T A A C T G C G T A A C T G G T A C C G T A G T A C A G T C G A C T A C G T A C T G A T G C A C G T A C G T
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAGAGCACCTTGC--
AAGAACATWHTGTTC
 A G T C C G T A A C T G C G T A A C T G G T A C C G T A G T A C A G T C G A C T A C G T A C T G A T G C A C G T A C G T
C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C

PB0091.1_Zbtb3_1/Jaspar

Match Rank:8
Score:0.53
Offset:-7
Orientation:reverse strand
Alignment:-------CAGAGCACCTTGC
NNNANTGCAGTGCNNTT---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A C T G G T A C C G T A G T A C A G T C G A C T A C G T A C T G A T G C
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T A C G T A C G T A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAGAGCACCTTGC--
VAGRACAKNCTGTBC
 A G T C C G T A A C T G C G T A A C T G G T A C C G T A G T A C A G T C G A C T A C G T A C T G A T G C A C G T A C G T
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CAGAGCACCTTGC--
TTCNAAGTACTTNNNNN
 A C G T A C G T A G T C C G T A A C T G C G T A A C T G G T A C C G T A G T A C A G T C G A C T A C G T A C T G A T G C A C G T A C G T
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T