Information for 17-GCTTCTTATGAATATT (Motif 33)

A C T G A G T C A C G T A C G T A G T C A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T C G T A A C G T A C G T A G T C C G T A A C G T C G T A C G T A A C T G C G T A C G T A A C T G A G T C
p-value:1e-5
log p-value:-1.244e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets74.7 +/- 1.2bp
Average Position of motif in Background43.5 +/- 19.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.70
Offset:7
Orientation:forward strand
Alignment:GCTTCTTATGAATATT-
-------ATGAATATTC
 A C T G A G T C A C G T A C G T A G T C A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:GCTTCTTATGAATATT---
----CTCATGAATATTCAT
 A C T G A G T C A C G T A C G T A G T C A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCTTCTTATGAATATT
-NNTNTCATGAATGT-
 A C T G A G T C A C G T A C G T A G T C A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C G T
A C G T A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.64
Offset:7
Orientation:forward strand
Alignment:GCTTCTTATGAATATT-
-------ATGMATATDC
 A C T G A G T C A C G T A C G T A G T C A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCTTCTTATGAATATT
ANTTCTNNAGAA----
 A C T G A G T C A C G T A C G T A G T C A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C G T
C T G A A G C T A C G T A C G T A G T C G A C T G A C T C T G A C T G A C T A G C G T A C G T A A C G T A C G T A C G T A C G T

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCTTCTTATGAATATT
--TTCTNMGGAA----
 A C T G A G T C A C G T A C G T A G T C A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C G T
A C G T A C G T C A G T G C A T A T G C G A C T C T A G T G C A C T A G C T A G G C T A C T G A A C G T A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCTTCTTATGAATATT--
-TNNATTATGCATANNTT
 A C T G A G T C A C G T A C G T A G T C A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Arid5a/MA0602.1/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GCTTCTTATGAATATT--
----NNTNNCAATATTAG
 A C T G A G T C A C G T A C G T A G T C A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:9
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GCTTCTTATGAATATT--
----NNTNNCAATATTAG
 A C T G A G T C A C G T A C G T A G T C A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0170.1_Sox17_2/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCTTCTTATGAATATT---
--NTTNTATGAATGTGNNC
 A C T G A G T C A C G T A C G T A G T C A C G T A C G T C G T A A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C