Information for 15-AGGCAGTTTAAGAAHA (Motif 25)

C G T A C A T G C T A G A T G C C G T A C T A G A C G T A C G T A C G T C G T A C G T A C A T G C T G A C G T A G T A C G C T A
Reverse Opposite:
C A G T C A G T G A C T A G C T G A T C A C G T A C G T C G T A C G T A C G T A A G T C A C G T T A C G A G T C G A T C A C G T
p-value:1e-8
log p-value:-1.849e+01
Information Content per bp:1.701
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif39.7
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets56.6 +/- 24.8bp
Average Position of motif in Background47.1 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AGGCAGTTTAAGAAHA
----AGGTCAAGGTCA
 C G T A C A T G C T A G A T G C C G T A C T A G A C G T A C G T A C G T C G T A C G T A C A T G C T G A C G T A G T A C G C T A
A C G T A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

Myb/MA0100.2/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGGCAGTTTAAGAAHA
TGGCAGTTGN------
 C G T A C A T G C T A G A T G C C G T A C T A G A C G T A C G T A C G T C G T A C G T A C A T G C T G A C G T A G T A C G C T A
C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AGGCAGTTTAAGAAHA
----AGGTCAAGGTCA
 C G T A C A T G C T A G A T G C C G T A C T A G A C G T A C G T A C G T C G T A C G T A C A T G C T G A C G T A G T A C G C T A
A C G T A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

Hmx3/MA0898.1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGGCAGTTTAAGAAHA
ACAAGCAATTAAAGAAT-
 A C G T A C G T C G T A C A T G C T A G A T G C C G T A C T A G A C G T A C G T A C G T C G T A C G T A C A T G C T G A C G T A G T A C G C T A
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T A C G T

PH0043.1_Hmx3/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGGCAGTTTAAGAAHA
ACAAGCAATTAAAGAAT-
 A C G T A C G T C G T A C A T G C T A G A T G C C G T A C T A G A C G T A C G T A C G T C G T A C G T A C A T G C T G A C G T A G T A C G C T A
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T A C G T

Hmx2/MA0897.1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGGCAGTTTAAGAAHA
ACAAGCAATTAAAGAAT-
 A C G T A C G T C G T A C A T G C T A G A T G C C G T A C T A G A C G T A C G T A C G T C G T A C G T A C A T G C T G A C G T A G T A C G C T A
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T A C G T

PH0042.1_Hmx2/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGGCAGTTTAAGAAHA
ACAAGCAATTAAAGAAT-
 A C G T A C G T C G T A C A T G C T A G A T G C C G T A C T A G A C G T A C G T A C G T C G T A C G T A C A T G C T G A C G T A G T A C G C T A
T C G A T A G C T G C A C T G A T C A G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A T C A G T C G A C T G A C A G T A C G T

PH0122.1_Obox2/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AGGCAGTTTAAGAAHA
TGAGGGGGATTAACTAT-
 A C G T A C G T C G T A C A T G C T A G A T G C C G T A C T A G A C G T A C G T A C G T C G T A C G T A C A T G C T G A C G T A G T A C G C T A
C G A T A C T G T C G A C T A G C T A G C T A G C T A G C A T G G T C A C A G T G C A T C G T A C G T A G T A C C G A T G T C A G A C T A C G T

Foxj3/MA0851.1/Jaspar

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AGGCAGTTTAAGAAHA--
-AAAAAGTAAACAAACAC
 C G T A C A T G C T A G A T G C C G T A C T A G A C G T A C G T A C G T C G T A C G T A C A T G C T G A C G T A G T A C G C T A A C G T A C G T
A C G T G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

PB0017.1_Foxj3_1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:AGGCAGTTTAAGAAHA--
-AAAAAGTAAACAAACAC
 C G T A C A T G C T A G A T G C C G T A C T A G A C G T A C G T A C G T C G T A C G T A C A T G C T G A C G T A G T A C G C T A A C G T A C G T
A C G T G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C