Information for 5-TGTAAAATCM (Motif 20)

A C G T A C T G A G C T C G T A C G T A T C G A T G C A A G C T A G T C G T C A
Reverse Opposite:
C A G T C T A G T C G A A C G T A G C T A C G T C G A T T C G A G T A C G T C A
p-value:1e-9
log p-value:-2.135e+01
Information Content per bp:1.646
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif5.34%
Number of Background Sequences with motif807.6
Percentage of Background Sequences with motif1.64%
Average Position of motif in Targets49.0 +/- 25.1bp
Average Position of motif in Background49.7 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RELA/MA0107.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TGTAAAATCM-
-GGAAATTCCC
 A C G T A C T G A G C T C G T A C G T A T C G A T G C A A G C T A G T C G T C A A C G T
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGTAAAATCM
AATGGAAAAT--
 A C G T A C G T A C G T A C T G A G C T C G T A C G T A T C G A T G C A A G C T A G T C G T C A
T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TGTAAAATCM-
-GGAAANCCCC
 A C G T A C T G A G C T C G T A C G T A T C G A T G C A A G C T A G T C G T C A A C G T
A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

NFAT5/MA0606.1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TGTAAAATCM
NATGGAAAAN--
 A C G T A C G T A C G T A C T G A G C T C G T A C G T A T C G A T G C A A G C T A G T C G T C A
G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TGTAAAATCM-
-GGAAATTCCC
 A C G T A C T G A G C T C G T A C G T A T C G A T G C A A G C T A G T C G T C A A C G T
A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

NFATC2/MA0152.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGTAAAATCM
TGGAAAA---
 A C G T A C T G A G C T C G T A C G T A T C G A T G C A A G C T A G T C G T C A
C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:7
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TGTAAAATCM
AAGGTGTKAA----
 A C G T A C G T A C G T A C G T A C G T A C T G A G C T C G T A C G T A T C G A T G C A A G C T A G T C G T C A
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGTAAAATCM
TATGCWAATBAV
 A C G T A C G T A C G T A C T G A G C T C G T A C G T A T C G A T G C A A G C T A G T C G T C A
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

NFATC3/MA0625.1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TGTAAAATCM
AATGGAAAAT--
 A C G T A C G T A C G T A C T G A G C T C G T A C G T A T C G A T G C A A G C T A G T C G T C A
C G T A C T G A G A C T T A C G C A T G T C G A C G T A G C T A C T G A G C A T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGTAAAATCM-
-GGAAATCCCC
 A C G T A C T G A G C T C G T A C G T A T C G A T G C A A G C T A G T C G T C A A C G T
A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C