Information for 18-CAGCCTCAGTGAC (Motif 36)

A T G C C G T A A C T G A G T C G T A C A G C T A G T C C G T A C T A G A C G T A C T G C T G A G A T C
Reverse Opposite:
C A T G A G C T G T A C G T C A A G T C C G A T C T A G T C G A A C T G A C T G G T A C A C G T A T C G
p-value:1e-8
log p-value:-1.848e+01
Information Content per bp:1.771
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif9.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets40.5 +/- 20.8bp
Average Position of motif in Background58.9 +/- 15.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAGCCTCAGTGAC
CAGCC--------
 A T G C C G T A A C T G A G T C G T A C A G C T A G T C C G T A C T A G A C G T A C T G C T G A G A T C
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAGCCTCAGTGAC
-AGCCTCAGGCA-
 A T G C C G T A A C T G A G T C G T A C A G C T A G T C C G T A C T A G A C G T A C T G C T G A G A T C
A C G T G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CAGCCTCAGTGAC-
--GCCTCAGGGCAT
 A T G C C G T A A C T G A G T C G T A C A G C T A G T C C G T A C T A G A C G T A C T G C T G A G A T C A C G T
A C G T A C G T A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CAGCCTCAGTGAC
-AGCCTCAGGCA-
 A T G C C G T A A C T G A G T C G T A C A G C T A G T C C G T A C T A G A C G T A C T G C T G A G A T C
A C G T G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAGCCTCAGTGAC
-CGCCTCAGGCA-
 A T G C C G T A A C T G A G T C G T A C A G C T A G T C C G T A C T A G A C G T A C T G C T G A G A T C
A C G T G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CAGCCTCAGTGAC-
--SCCTSAGGSCAW
 A T G C C G T A A C T G A G T C G T A C A G C T A G T C C G T A C T A G A C G T A C T G C T G A G A T C A C G T
A C G T A C G T A T C G A G T C A G T C G A C T A T G C C T G A C T A G A C T G T A C G G T A C C T G A C G A T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCTCAGTGAC
CACAGN---------
 A C G T A C G T A T G C C G T A A C T G A G T C G T A C A G C T A G T C C G T A C T A G A C G T A C T G C T G A G A T C
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTCAGTGAC
TCAGNGAGCGTGAC
 A C G T A T G C C G T A A C T G A G T C G T A C A G C T A G T C C G T A C T A G A C G T A C T G C T G A G A T C
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CAGCCTCAGTGAC----
-TGACCCAGTGACCTAC
 A T G C C G T A A C T G A G T C G T A C A G C T A G T C C G T A C T A G A C G T A C T G C T G A G A T C A C G T A C G T A C G T A C G T
A C G T G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:10
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CAGCCTCAGTGAC----
TTTMCGCTTSABTGAACACN
 A C G T A C G T A C G T A T G C C G T A A C T G A G T C G T A C A G C T A G T C C G T A C T A G A C G T A C T G C T G A G A T C A C G T A C G T A C G T A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A