Information for 23-CACAHTVACATAGTTT (Motif 34)

G T A C G C T A A G T C G T C A G C T A A C G T T A C G C G T A G T A C C G T A A G C T C G T A A C T G A G C T A C G T A G C T
Reverse Opposite:
C T G A C G T A C T G A G T A C A C G T C T G A C G A T A C T G A C G T A G T C G T C A C A G T A C G T C T A G C G A T A C T G
p-value:1e-8
log p-value:-1.983e+01
Information Content per bp:1.756
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.0 +/- 26.6bp
Average Position of motif in Background20.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox1/MA0870.1/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CACAHTVACATAGTTT
AACAATAACATTGTT-
 G T A C G C T A A G T C G T C A G C T A A C G T T A C G C G T A G T A C C G T A A G C T C G T A A C T G A G C T A C G T A G C T
T G C A G C T A A G T C G T C A G T C A C G A T C G T A T C G A A T G C C G T A A C G T A G C T A C T G G A C T A G C T A C G T

SOX21/MA0866.1/Jaspar

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CACAHTVACATAGTTT
AACACTACCATTGTT-
 G T A C G C T A A G T C G T C A G C T A A C G T T A C G C G T A G T A C C G T A A G C T C G T A A C T G A G C T A C G T A G C T
T C G A G T C A G A T C G C T A G T A C A G C T C T G A G T A C G T A C G T C A A G C T A G C T T A C G A G C T G A C T A C G T

Sox11/MA0869.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CACAHTVACATAGTTT
AACACTGAAATTGTT-
 G T A C G C T A A G T C G T C A G C T A A C G T T A C G C G T A G T A C C G T A A G C T C G T A A C T G A G C T A C G T A G C T
T C G A C G T A A G T C G T C A G T A C A C G T C T A G G T C A C T G A C G T A A C G T A C G T A C T G A C G T A C G T A C G T

PB0161.1_Rxra_2/Jaspar

Match Rank:4
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CACAHTVACATAGTTT-----
-----TCGCGAAGGTTGTACT
 G T A C G C T A A G T C G T C A G C T A A C G T T A C G C G T A G T A C C G T A A G C T C G T A A C T G A G C T A C G T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:5
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CACAHTVACATAGTTT--
----TTGACCTANTTATN
 G T A C G C T A A G T C G T C A G C T A A C G T T A C G C G T A G T A C C G T A A G C T C G T A A C T G A G C T A C G T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CACAHTVACATAGTTT
-----TGACCTARTT-
 G T A C G C T A A G T C G T C A G C T A A C G T T A C G C G T A G T A C C G T A A G C T C G T A A C T G A G C T A C G T A G C T
A C G T A C G T A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

SOX4/MA0867.1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CACAHTVACATAGTTT
AACACTGCAATTGTTC
 G T A C G C T A A G T C G T C A G C T A A C G T T A C G C G T A G T A C C G T A A G C T C G T A A C T G A G C T A C G T A G C T
C G T A C T G A A G T C G T C A G T A C A G C T A C T G G T A C G T C A G T C A G A C T A G C T A C T G A G C T A C G T G A T C

PH0088.1_Isl2/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CACAHTVACATAGTTT
CAAAATCAATTAATTT
 G T A C G C T A A G T C G T C A G C T A A C G T T A C G C G T A G T A C C G T A A G C T C G T A A C T G A G C T A C G T A G C T
G T A C G C T A G T C A G T C A G T C A A G C T G A T C G T C A G T C A G A C T G A C T C G T A C T G A C A G T C G A T G A C T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.51
Offset:3
Orientation:forward strand
Alignment:CACAHTVACATAGTTT
---CCAAAAATAG---
 G T A C G C T A A G T C G T C A G C T A A C G T T A C G C G T A G T A C C G T A A G C T C G T A A C T G A G C T A C G T A G C T
A C G T A C G T A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T

Nfe2l2/MA0150.2/Jaspar

Match Rank:10
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CACAHTVACATAGTTT
CAGCATGACTCAGCA-
 G T A C G C T A A G T C G T C A G C T A A C G T T A C G C G T A G T A C C G T A A G C T C G T A A C T G A G C T A C G T A G C T
G T A C C T G A T A C G T G A C T C G A A C G T A C T G C G T A A T G C G C A T G A T C C T G A T A C G A T G C C G T A A C G T