Information for 8-GRGCCWTSAKKTG (Motif 16)

C T A G C T A G A C T G A G T C A G T C C G A T A C G T A T G C C G T A A C T G C A G T A C G T A C T G
Reverse Opposite:
A G T C G T C A G T C A G T A C A C G T A T C G C G T A C G T A A C T G C T A G A G T C A G T C A G T C
p-value:1e-11
log p-value:-2.560e+01
Information Content per bp:1.830
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.4 +/- 15.5bp
Average Position of motif in Background33.8 +/- 19.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GRGCCWTSAKKTG
-GGCCATTAAC--
 C T A G C T A G A C T G A G T C A G T C C G A T A C G T A T G C C G T A A C T G C A G T A C G T A C T G
A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GRGCCWTSAKKTG----
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T C T A G C T A G A C T G A G T C A G T C C G A T A C G T A T G C C G T A A C T G C A G T A C G T A C T G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GRGCCWTSAKKTG
TGACCTTGAN---
 C T A G C T A G A C T G A G T C A G T C C G A T A C G T A T G C C G T A A C T G C A G T A C G T A C T G
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:4
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GRGCCWTSAKKTG
GCTGACCTTGAACTN
 A C G T A C G T C T A G C T A G A C T G A G T C A G T C C G A T A C G T A T G C C G T A A C T G C A G T A C G T A C T G
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----GRGCCWTSAKKTG--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T C T A G C T A G A C T G A G T C A G T C C G A T A C G T A T G C C G T A A C T G C A G T A C G T A C T G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:GRGCCWTSAKKTG--
-----NNCAGGTGNN
 C T A G C T A G A C T G A G T C A G T C C G A T A C G T A T G C C G T A A C T G C A G T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G

TFEC/MA0871.1/Jaspar

Match Rank:7
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:GRGCCWTSAKKTG--
-----NTCACGTGAT
 C T A G C T A G A C T G A G T C A G T C C G A T A C G T A T G C C G T A A C T G C A G T A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A C G T A G T C C G T A A G T C T C A G C G A T A C T G G T C A A G C T

CTCF/MA0139.1/Jaspar

Match Rank:8
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GRGCCWTSAKKTG----
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T C T A G C T A G A C T G A G T C A G T C C G A T A C G T A T G C C G T A A C T G C A G T A C G T A C T G A C G T A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:GRGCCWTSAKKTG
TGACCTTGAV---
 C T A G C T A G A C T G A G T C A G T C C G A T A C G T A T G C C G T A A C T G C A G T A C G T A C T G
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GRGCCWTSAKKTG
--GCCATCTGTT-
 C T A G C T A G A C T G A G T C A G T C C G A T A C G T A T G C C G T A A C T G C A G T A C G T A C T G
A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T