Information for 25-TGTGCCGGGCTCTCGA (Motif 41)

A G C T A T C G A G C T A T C G A G T C A G T C C T A G A C T G A C T G A G T C A C G T A G T C A C G T G A T C C T A G G T C A
Reverse Opposite:
A C G T A G T C C T A G T G C A C T A G C G T A A C T G G T A C G T A C A G T C A C T G C T A G A T G C C T G A A T G C C T G A
p-value:1e-7
log p-value:-1.704e+01
Information Content per bp:1.765
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.8 +/- 12.8bp
Average Position of motif in Background21.5 +/- 4.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TGTGCCGGGCTCTCGA
CTGTTCCTGG-------
 A C G T A G C T A T C G A G C T A T C G A G T C A G T C C T A G A C T G A C T G A G T C A C G T A G T C A C G T G A T C C T A G G T C A
T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.50
Offset:-7
Orientation:reverse strand
Alignment:-------TGTGCCGGGCTCTCGA
NNNNTTGTGTGCTTNN-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A T C G A G C T A T C G A G T C A G T C C T A G A C T G A C T G A G T C A C G T A G T C A C G T G A T C C T A G G T C A
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:TGTGCCGGGCTCTCGA
-------NGCTN----
 A G C T A T C G A G C T A T C G A G T C A G T C C T A G A C T G A C T G A G T C A C G T A G T C A C G T G A T C C T A G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-TGTGCCGGGCTCTCGA
AGGTGHCAGACA-----
 A C G T A G C T A T C G A G C T A T C G A G T C A G T C C T A G A C T G A C T G A G T C A C G T A G T C A C G T G A T C C T A G G T C A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.47
Offset:7
Orientation:reverse strand
Alignment:TGTGCCGGGCTCTCGA-
-------NSCACTYVAV
 A G C T A T C G A G C T A T C G A G T C A G T C C T A G A C T G A C T G A G T C A C G T A G T C A C G T G A T C C T A G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.47
Offset:4
Orientation:reverse strand
Alignment:TGTGCCGGGCTCTCGA---
----BCNGGTTCTAGANCN
 A G C T A T C G A G C T A T C G A G T C A G T C C T A G A C T G A C T G A G T C A C G T A G T C A C G T G A T C C T A G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T T G A C C T A G C A T G C T A G G A C T A C G T A G T C A G C T C T G A T A C G T C G A C G A T A G T C G A C T

GFX(?)/Promoter/Homer

Match Rank:7
Score:0.47
Offset:6
Orientation:forward strand
Alignment:TGTGCCGGGCTCTCGA--
------ATTCTCGCGAGA
 A G C T A T C G A G C T A T C G A G T C A G T C C T A G A C T G A C T G A G T C A C G T A G T C A C G T G A T C C T A G G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A G A C T A G C T T G A C A G C T G T A C T C A G G A T C A T C G T G C A A C T G C T G A

ZBTB33/MA0527.1/Jaspar

Match Rank:8
Score:0.46
Offset:7
Orientation:forward strand
Alignment:TGTGCCGGGCTCTCGA------
-------CTCTCGCGAGATCTG
 A G C T A T C G A G C T A T C G A G T C A G T C C T A G A C T G A C T G A G T C A C G T A G T C A C G T G A T C C T A G G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G C T T G A C G A C T A G T C C T A G G A T C A C T G T C G A A C T G T C G A A G C T A G T C A G C T A T C G

PB0130.1_Gm397_2/Jaspar

Match Rank:9
Score:0.46
Offset:-7
Orientation:reverse strand
Alignment:-------TGTGCCGGGCTCTCGA
NNGCGTGTGTGCNGCN-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A T C G A G C T A T C G A G T C A G T C C T A G A C T G A C T G A G T C A C G T A G T C A C G T G A T C C T A G G T C A
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.46
Offset:6
Orientation:forward strand
Alignment:TGTGCCGGGCTCTCGA
------AASCACTCAA
 A G C T A T C G A G C T A T C G A G T C A G T C C T A G A C T G A C T G A G T C A C G T A G T C A C G T G A T C C T A G G T C A
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A