Information for 16-AGACAAAAATTTGAGA (Motif 27)

G C T A T A C G C G T A A G T C C G T A T C G A C G T A G T C A G T C A A G C T A G C T C G A T T A C G C G T A A C T G T G C A
Reverse Opposite:
A C G T A G T C C G A T A G T C C G T A C T G A T C G A C A G T C A G T A C G T A G C T C G A T A C T G C G A T A T G C C G A T
p-value:1e-10
log p-value:-2.515e+01
Information Content per bp:1.735
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.3 +/- 23.2bp
Average Position of motif in Background69.4 +/- 33.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA5/MA0158.1/Jaspar

Match Rank:1
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:AGACAAAAATTTGAGA
-------AATTAGTG-
 G C T A T A C G C G T A A G T C C G T A T C G A C G T A G T C A G T C A A G C T A G C T C G A T T A C G C G T A A C T G T G C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:2
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:AGACAAAAATTTGAGA
AAACAAACATTC----
 G C T A T A C G C G T A A G T C C G T A T C G A C G T A G T C A G T C A A G C T A G C T C G A T T A C G C G T A A C T G T G C A
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T A C G T A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:AGACAAAAATTTGAGA-----
-----NAATTTTACGAGNTNN
 G C T A T A C G C G T A A G T C C G T A T C G A C G T A G T C A G T C A A G C T A G C T C G A T T A C G C G T A A C T G T G C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:4
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:AGACAAAAATTTGAGA-
-----GWAAYHTGABMC
 G C T A T A C G C G T A A G T C C G T A T C G A C G T A G T C A G T C A A G C T A G C T C G A T T A C G C G T A A C T G T G C A A C G T
A C G T A C G T A C G T A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

PB0016.1_Foxj1_1/Jaspar

Match Rank:5
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----AGACAAAAATTTGAGA
AAAGTAAACAAAAATT-----
 A C G T A C G T A C G T A C G T A C G T G C T A T A C G C G T A A G T C C G T A T C G A C G T A G T C A G T C A A G C T A G C T C G A T T A C G C G T A A C T G T G C A
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T A C G T A C G T A C G T A C G T A C G T

PB0042.1_Mafk_1/Jaspar

Match Rank:6
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-AGACAAAAATTTGAGA
AAGTCAGCANTTTTN--
 A C G T G C T A T A C G C G T A A G T C C G T A T C G A C G T A G T C A G T C A A G C T A G C T C G A T T A C G C G T A A C T G T G C A
C T G A C G T A T C A G C G A T G T A C C G T A C A T G G T A C C T G A G C A T C G A T G C A T G C A T G C A T G C T A A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:7
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----AGACAAAAATTTGAGA
AAACAGACAAAGGAAT----
 A C G T A C G T A C G T A C G T G C T A T A C G C G T A A G T C C G T A T C G A C G T A G T C A G T C A A G C T A G C T C G A T T A C G C G T A A C T G T G C A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:8
Score:0.49
Offset:5
Orientation:forward strand
Alignment:AGACAAAAATTTGAGA-
-----GWAAYHTGAKMC
 G C T A T A C G C G T A A G T C C G T A T C G A C G T A G T C A G T C A A G C T A G C T C G A T T A C G C G T A A C T G T G C A A C G T
A C G T A C G T A C G T A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

PH0077.1_Hoxd12/Jaspar

Match Rank:9
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:AGACAAAAATTTGAGA-----
----NNNATTTTACGACNNTN
 G C T A T A C G C G T A A G T C C G T A T C G A C G T A G T C A G T C A A G C T A G C T C G A T T A C G C G T A A C T G T G C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

PH0048.1_Hoxa13/Jaspar

Match Rank:10
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:AGACAAAAATTTGAGA-----
-----ANATTTTACGAGNNNN
 G C T A T A C G C G T A A G T C C G T A T C G A C G T A G T C A G T C A A G C T A G C T C G A T T A C G C G T A A C T G T G C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T