Information for 12-GAARTTACCAAMT (Motif 21)

A C T G C G T A G T C A C T G A A C G T A C G T C G T A A G T C A G T C C G T A C G T A G T C A A C G T
Reverse Opposite:
C G T A A C G T C G A T A C G T C T A G A C T G A C G T C G T A C G T A A G C T A C G T A C G T A G T C
p-value:1e-11
log p-value:-2.557e+01
Information Content per bp:1.912
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.4 +/- 20.5bp
Average Position of motif in Background62.7 +/- 8.4bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0061.1_Hoxb6/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GAARTTACCAAMT
NNNGTAATTACNNATA
 A C G T A C G T A C G T A C T G C G T A G T C A C T G A A C G T A C G T C G T A A G T C A G T C C G T A C G T A G T C A A C G T
T C G A G T C A A T C G C A T G A G C T G T C A C G T A C G A T C A G T C T G A T G A C T A G C G T C A G C T A C G A T C G T A

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GAARTTACCAAMT
GGAAATTCCC----
 A C G T A C T G C G T A G T C A C T G A A C G T A C G T C G T A A G T C A G T C C G T A C G T A G T C A A C G T
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T A C G T

PH0053.1_Hoxa6/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GAARTTACCAAMT
AAGGTAATTACCTAAT
 A C G T A C G T A C G T A C T G C G T A G T C A C T G A A C G T A C G T C G T A A G T C A G T C C G T A C G T A G T C A A C G T
T C G A G T C A C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A T G A C G A T C G A C T G T C A C G T A C A G T

Hoxb5/MA0904.1/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GAARTTACCAAMT
ACGGTAATTAGCTCAT
 A C G T A C G T A C G T A C T G C G T A G T C A C T G A A C G T A C G T C G T A A G T C A G T C C G T A C G T A G T C A A C G T
T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T

PH0060.1_Hoxb5/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GAARTTACCAAMT
ACGGTAATTAGCTCAT
 A C G T A C G T A C G T A C T G C G T A G T C A C T G A A C G T A C G T C G T A A G T C A G T C C G T A C G T A G T C A A C G T
T G C A G T A C C T A G A C T G G A C T G T C A G C T A C A G T A C G T C T G A T A C G G A T C G C A T G T A C C G T A G C A T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GAARTTACCAAMT
---GGTGCCAAGT
 A C T G C G T A G T C A C T G A A C G T A C G T C G T A A G T C A G T C C G T A C G T A G T C A A C G T
A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GAARTTACCAAMT
---ATTAACACCT
 A C T G C G T A G T C A C T G A A C G T A C G T C G T A A G T C A G T C C G T A C G T A G T C A A C G T
A C G T A C G T A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T

Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GAARTTACCAAMT---
HWWNNTAATTRGCHAATTAN
 A C G T A C G T A C G T A C G T A C T G C G T A G T C A C T G A A C G T A C G T C G T A A G T C A G T C C G T A C G T A G T C A A C G T A C G T A C G T A C G T
G C A T C G A T C G A T C A G T G A C T G A C T T C G A C G T A C G A T A G C T C T G A A C T G T G A C G A C T T C G A C G T A C G A T A G C T C T G A C T A G

RELA/MA0107.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GAARTTACCAAMT
GGAAATTCCC----
 A C G T A C T G C G T A G T C A C T G A A C G T A C G T C G T A A G T C A G T C C G T A C G T A G T C A A C G T
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T A C G T

HOXA2/MA0900.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAARTTACCAAMT
CCTAATTACC----
 A C G T A C T G C G T A G T C A C T G A A C G T A C G T C G T A A G T C A G T C C G T A C G T A G T C A A C G T
T A G C T A G C G A C T T G C A T C G A A C G T G A C T G C T A T A G C T A G C A C G T A C G T A C G T A C G T