Information for 6-GCTTGATATG (Motif 15)

A C T G T G A C C A G T C A G T A C T G G C T A C G A T T G C A A G C T T A C G
Reverse Opposite:
A T G C T C G A A C G T G C T A C G A T T G A C G T C A G C T A A C T G T G A C
p-value:1e-12
log p-value:-2.865e+01
Information Content per bp:1.654
Number of Target Sequences with motif69.0
Percentage of Target Sequences with motif9.21%
Number of Background Sequences with motif1634.8
Percentage of Background Sequences with motif3.44%
Average Position of motif in Targets46.8 +/- 26.9bp
Average Position of motif in Background49.2 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCTTGATATG---
NNCGTTGCTATGGNN
 A C G T A C G T A C T G T G A C C A G T C A G T A C T G G C T A C G A T T G C A A G C T T A C G A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCTTGATATG-----
CTTTGTTATGCAAAT
 A C T G T G A C C A G T C A G T A C T G G C T A C G A T T G C A A G C T T A C G A C G T A C G T A C G T A C G T A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCTTGATATG----
GTNTTGTTGTGANNT
 A C G T A C T G T G A C C A G T C A G T A C T G G C T A C G A T T G C A A G C T T A C G A C G T A C G T A C G T A C G T
C A T G A G C T T A C G G A C T G C A T A C T G A C G T G A C T C T A G A G C T A C T G T G C A A G T C T C G A C G A T

PB0105.1_Arid3a_2/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCTTGATATG---
NNATNTGATANNNNN
 A C G T A C G T A C T G T G A C C A G T C A G T A C T G G C T A C G A T T G C A A G C T T A C G A C G T A C G T A C G T
G T C A C T G A G C T A A G C T G C A T G A C T A T C G T C G A A G C T T C G A A G T C A T C G A C T G C A T G C A G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCTTGATATG---
NCCGTTGCTANGNGN
 A C G T A C G T A C T G T G A C C A G T C A G T A C T G G C T A C G A T T G C A A G C T T A C G A C G T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCTTGATATG-----
CATTGTTATGCAAAT
 A C T G T G A C C A G T C A G T A C T G G C T A C G A T T G C A A G C T T A C G A C G T A C G T A C G T A C G T A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

MF0008.1_MADS_class/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCTTGATATG-
-CCATATATGG
 A C T G T G A C C A G T C A G T A C T G G C T A C G A T T G C A A G C T T A C G A C G T
A C G T G A T C A G T C G C T A C G A T C G T A C G A T C G T A G C A T C T A G C A T G

PB0054.1_Rfx3_1/Jaspar

Match Rank:8
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------GCTTGATATG-------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G T G A C C A G T C A G T A C T G G C T A C G A T T G C A A G C T T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

PB0119.1_Foxa2_2/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCTTGATATG---
NCNTTTGTTATTTNN
 A C G T A C G T A C T G T G A C C A G T C A G T A C T G G C T A C G A T T G C A A G C T T A C G A C G T A C G T A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

PBX1/MA0070.1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---GCTTGATATG
TTTGATTGATGN-
 A C G T A C G T A C G T A C T G T G A C C A G T C A G T A C T G G C T A C G A T T G C A A G C T T A C G
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T