Information for 12-TTGCTCTGAMAAATAC (Motif 19)

A C G T C A G T A C T G A G T C G A C T G T A C A C G T C A T G C G T A T G A C C G T A C G T A C G T A A C G T T C G A G A T C
Reverse Opposite:
C T A G A C G T G T C A A C G T G C A T G C A T A C T G C G A T G A T C C G T A A C T G C G T A C T A G T G A C G T C A T G C A
p-value:1e-9
log p-value:-2.173e+01
Information Content per bp:1.694
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif35.4
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets67.5 +/- 23.4bp
Average Position of motif in Background45.0 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:1
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TTGCTCTGAMAAATAC-
--ACCGTGACTAATTNN
 A C G T C A G T A C T G A G T C G A C T G T A C A C G T C A T G C G T A T G A C C G T A C G T A C G T A A C G T T C G A G A T C A C G T
A C G T A C G T C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

PB0108.1_Atf1_2/Jaspar

Match Rank:2
Score:0.53
Offset:3
Orientation:forward strand
Alignment:TTGCTCTGAMAAATAC-
---GAATGACGAATAAC
 A C G T C A G T A C T G A G T C G A C T G T A C A C G T C A T G C G T A T G A C C G T A C G T A C G T A A C G T T C G A G A T C A C G T
A C G T A C G T A C G T T A C G C T G A T C G A A C G T C T A G C G T A A G T C C T A G G T C A C T G A A G C T C G T A C G T A G T A C

Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer

Match Rank:3
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:TTGCTCTGAMAAATAC
----DATGASTCATNN
 A C G T C A G T A C T G A G T C G A C T G T A C A C G T C A T G C G T A T G A C C G T A C G T A C G T A A C G T T C G A G A T C
A C G T A C G T A C G T A C G T C A T G T C G A C G A T C A T G G C T A T A G C C G A T G T A C G C T A A G C T G A T C T G A C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:4
Score:0.50
Offset:6
Orientation:forward strand
Alignment:TTGCTCTGAMAAATAC--
------TGATTRATGGCY
 A C G T C A G T A C T G A G T C G A C T G T A C A C G T C A T G C G T A T G A C C G T A C G T A C G T A A C G T T C G A G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

PB0082.1_Tcf3_1/Jaspar

Match Rank:5
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--TTGCTCTGAMAAATAC
NNTTCCTTTGATCTANA-
 A C G T A C G T A C G T C A G T A C T G A G T C G A C T G T A C A C G T C A T G C G T A T G A C C G T A C G T A C G T A A C G T T C G A G A T C
C G A T C G A T C G A T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T C T G A A C G T

PB0116.1_Elf3_2/Jaspar

Match Rank:6
Score:0.50
Offset:2
Orientation:forward strand
Alignment:TTGCTCTGAMAAATAC---
--GTTCAAAAAAAAAATTC
 A C G T C A G T A C T G A G T C G A C T G T A C A C G T C A T G C G T A T G A C C G T A C G T A C G T A A C G T T C G A G A T C A C G T A C G T A C G T
A C G T A C G T C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

PB0032.1_IRC900814_1/Jaspar

Match Rank:7
Score:0.50
Offset:1
Orientation:forward strand
Alignment:TTGCTCTGAMAAATAC-
-ATTTACGACAAATAGC
 A C G T C A G T A C T G A G T C G A C T G T A C A C G T C A T G C G T A T G A C C G T A C G T A C G T A A C G T T C G A G A T C A C G T
A C G T C G T A C G A T G A C T A G C T G C T A A G T C A C T G C T G A T G A C C T G A C G T A G C T A G C A T C G T A C T A G A G T C

PB0172.1_Sox1_2/Jaspar

Match Rank:8
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:TTGCTCTGAMAAATAC--
---NNNTAACAATTATAN
 A C G T C A G T A C T G A G T C G A C T G T A C A C G T C A T G C G T A T G A C C G T A C G T A C G T A A C G T T C G A G A T C A C G T A C G T
A C G T A C G T A C G T A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer

Match Rank:9
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:TTGCTCTGAMAAATAC
-----ATGASTCATH-
 A C G T C A G T A C T G A G T C G A C T G T A C A C G T C A T G C G T A T G A C C G T A C G T A C G T A A C G T T C G A G A T C
A C G T A C G T A C G T A C G T A C G T T G C A A C G T A C T G C G T A T A G C C G A T G T A C C G T A A C G T G T C A A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:TTGCTCTGAMAAATAC
----RHTGWCAR----
 A C G T C A G T A C T G A G T C G A C T G T A C A C G T C A T G C G T A T G A C C G T A C G T A C G T A A C G T T C G A G A T C
A C G T A C G T A C G T A C G T C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T