Information for 6-CCGCCGCCATGGC (Motif 9)

A G T C A T G C C A T G A G T C T G A C A C T G A G T C T A G C G T C A A G C T T A C G A C T G A T G C
Reverse Opposite:
A T C G T G A C A T G C T C G A C A G T A T C G A C T G T G A C A C T G T A C G G A T C T A C G C T A G
p-value:1e-9
log p-value:-2.259e+01
Information Content per bp:1.744
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif3.97%
Number of Background Sequences with motif525.7
Percentage of Background Sequences with motif1.12%
Average Position of motif in Targets48.6 +/- 23.7bp
Average Position of motif in Background48.6 +/- 33.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCGCCGCCATGGC--
-NGTTGCCATGGCAA
 A G T C A T G C C A T G A G T C T G A C A C T G A G T C T A G C G T C A A G C T T A C G A C T G A T G C A C G T A C G T
A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCGCCGCCATGGC---
CGGTTGCCATGGCAAC
 A G T C A T G C C A T G A G T C T G A C A C T G A G T C T A G C G T C A A G C T T A C G A C T G A T G C A C G T A C G T A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCGCCGCCATGGC
-GTCCGCCATTA-
 A G T C A T G C C A T G A G T C T G A C A C T G A G T C T A G C G T C A A G C T T A C G A C T G A T G C
A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T

YY1(Zf)/Promoter/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCGCCGCCATGGC-
--GCCGCCATCTTG
 A G T C A T G C C A T G A G T C T G A C A C T G A G T C T A G C G T C A A G C T T A C G A C T G A T G C A C G T
A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCGCCGCCATGGC---
-KGTTGCCATGGCAAC
 A G T C A T G C C A T G A G T C T G A C A C T G A G T C T A G C G T C A A G C T T A C G A C T G A T G C A C G T A C G T A C G T
A C G T A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

PB0076.1_Sp4_1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CCGCCGCCATGGC
GGTCCCGCCCCCTTCTC
 A C G T A C G T A C G T A C G T A G T C A T G C C A T G A G T C T G A C A C T G A G T C T A G C G T C A A G C T T A C G A C T G A T G C
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C

Rfx1/MA0509.1/Jaspar

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCGCCGCCATGGC---
--GTTGCCATGGCAAC
 A G T C A T G C C A T G A G T C T G A C A C T G A G T C T A G C G T C A A G C T T A C G A C T G A T G C A C G T A C G T A C G T
A C G T A C G T C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCGCCGCCATGGC--
-GGTTGCCATGGCAA
 A G T C A T G C C A T G A G T C T G A C A C T G A G T C T A G C G T C A A G C T T A C G A C T G A T G C A C G T A C G T
A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

EGR1/MA0162.2/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCGCCGCCATGGC-
CCCCCGCCCCCGCC
 A G T C A T G C C A T G A G T C T G A C A C T G A G T C T A G C G T C A A G C T T A C G A C T G A T G C A C G T
A T G C G A T C A G T C G T A C G A T C C T A G A G T C A G T C A G T C G T A C A G T C C A T G A T G C T G A C

RFX4/MA0799.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCGCCGCCATGGC----
-CGTTGCCATGGCAACN
 A G T C A T G C C A T G A G T C T G A C A C T G A G T C T A G C G T C A A G C T T A C G A C T G A T G C A C G T A C G T A C G T A C G T
A C G T A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G