Information for 3-GCSCCCACAAGGC (Motif 4)

A C T G A T G C A T C G A G T C A G T C A G T C C G T A T A G C C G T A C G T A A C T G A C T G G T A C
Reverse Opposite:
A C T G A G T C A G T C A C G T A C G T A T C G A C G T A C T G A C T G A C T G A T G C A T C G A G T C
p-value:1e-11
log p-value:-2.656e+01
Information Content per bp:1.881
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.6 +/- 27.7bp
Average Position of motif in Background51.6 +/- 12.2bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GCSCCCACAAGGC-
-TGCCCTGAGGGCA
 A C T G A T G C A T C G A G T C A G T C A G T C C G T A T A G C C G T A C G T A A C T G A C T G G T A C A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCSCCCACAAGGC-
ATTTCCCAGVAKSCY
 A C G T A C T G A T G C A T C G A G T C A G T C A G T C C G T A T A G C C G T A C G T A A C T G A C T G G T A C A C G T
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCSCCCACAAGGC-
-TGCCCNNAGGGCA
 A C T G A T G C A T C G A G T C A G T C A G T C C G T A T A G C C G T A C G T A A C T G A C T G G T A C A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCSCCCACAAGGC-
-TGCCCTNAGGGCA
 A C T G A T G C A T C G A G T C A G T C A G T C C G T A T A G C C G T A C G T A A C T G A C T G G T A C A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

ZNF143/MA0088.2/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCSCCCACAAGGC----
-TACCCACAATGCATTG
 A C T G A T G C A T C G A G T C A G T C A G T C C G T A T A G C C G T A C G T A A C T G A C T G G T A C A C G T A C G T A C G T A C G T
A C G T A G C T C G T A G T A C G T A C A G T C C T G A A G T C T C G A C T G A C G A T T C A G A G T C G T C A G A C T G A C T C T A G

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCSCCCACAAGGC
TGGGGCCCAC-----
 A C G T A C G T A C T G A T G C A T C G A G T C A G T C A G T C C G T A T A G C C G T A C G T A A C T G A C T G G T A C
G A C T C T A G A C T G A C T G T A C G A G T C A G T C A G T C C T G A A T G C A C G T A C G T A C G T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:7
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------GCSCCCACAAGGC
NNNGGGGCGCCCCCNN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A T C G A G T C A G T C A G T C C G T A T A G C C G T A C G T A A C T G A C T G G T A C
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A A C G T A C G T A C G T

GLIS3/MA0737.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GCSCCCACAAGGC
GACCCCCCACGAAG-
 A C G T A C G T A C T G A T G C A T C G A G T C A G T C A G T C C G T A T A G C C G T A C G T A A C T G A C T G G T A C
A C T G T C G A A G T C A G T C G A T C A G T C G T A C A G T C C T G A A G T C C T A G C G T A G T C A A T C G A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GCSCCCACAAGGC--
---CACAGCAGGGGG
 A C T G A T G C A T C G A G T C A G T C A G T C C G T A T A G C C G T A C G T A A C T G A C T G G T A C A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:GCSCCCACAAGGC
------ACAAAG-
 A C T G A T G C A T C G A G T C A G T C A G T C C G T A T A G C C G T A C G T A A C T G A C T G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T