Information for 4-GTCGAGCTCGCCG (Motif 4)

A T C G A C G T A G T C A C T G C G T A C T A G A G T C C G A T A G T C A C T G A T G C A G T C A C T G
Reverse Opposite:
A G T C C T A G A T C G A G T C A C T G C G T A A C T G A G T C A C G T A G T C A C T G C G T A A T G C
p-value:1e-10
log p-value:-2.433e+01
Information Content per bp:1.935
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.0 +/- 10.0bp
Average Position of motif in Background72.5 +/- 19.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GTCGAGCTCGCCG
----AGCGCGCC-
 A T C G A C G T A G T C A C T G C G T A C T A G A G T C C G A T A G T C A C T G A T G C A G T C A C T G
A C G T A C G T A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T

PB0127.1_Gata6_2/Jaspar

Match Rank:2
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GTCGAGCTCGCCG--
GCGGCGATATCGCAGCG
 A C G T A C G T A T C G A C G T A G T C A C T G C G T A C T A G A G T C C G A T A G T C A C T G A T G C A G T C A C T G A C G T A C G T
C A T G A T G C A T C G T C A G G T A C C A T G T G C A C A G T G T C A A C G T G T A C C A T G A T G C T G C A A T C G G A T C C A G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GTCGAGCTCGCCG-
GTCACGCTCNCTGA
 A T C G A C G T A G T C A C T G C G T A C T A G A G T C C G A T A G T C A C T G A T G C A G T C A C T G A C G T
A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GTCGAGCTCGCCG
GCTCGGSCTC----
 A C G T A T C G A C G T A G T C A C T G C G T A C T A G A G T C C G A T A G T C A C T G A T G C A G T C A C T G
C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C A C G T A C G T A C G T A C G T

POL001.1_MTE/Jaspar

Match Rank:5
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-GTCGAGCTCGCCG-----
TTTCGAGCGGAACGGTCGC
 A C G T A T C G A C G T A G T C A C T G C G T A C T A G A G T C C G A T A G T C A C T G A T G C A G T C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G A C T A G C T A G T C C T A G C G T A C T A G A G T C A T C G T A C G C G T A C T A G A G T C A C T G A T C G C G A T G A T C T A C G A G C T

PB0039.1_Klf7_1/Jaspar

Match Rank:6
Score:0.47
Offset:1
Orientation:forward strand
Alignment:GTCGAGCTCGCCG----
-TCGACCCCGCCCCTAT
 A T C G A C G T A G T C A C T G C G T A C T A G A G T C C G A T A G T C A C T G A T G C A G T C A C T G A C G T A C G T A C G T A C G T
A C G T G A C T A G T C C T A G T C G A G T A C G T A C T G A C G A T C C T A G A G T C A G T C A G T C G A T C G A C T G C T A C G A T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.47
Offset:3
Orientation:forward strand
Alignment:GTCGAGCTCGCCG
---CAGCC-----
 A T C G A C G T A G T C A C T G C G T A C T A G A G T C C G A T A G T C A C T G A T G C A G T C A C T G
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:8
Score:0.45
Offset:0
Orientation:forward strand
Alignment:GTCGAGCTCGCCG-
GCCGCGCAGTGCGT
 A T C G A C G T A G T C A C T G C G T A C T A G A G T C C G A T A G T C A C T G A T G C A G T C A C T G A C G T
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

GLI2/MA0734.1/Jaspar

Match Rank:9
Score:0.45
Offset:1
Orientation:forward strand
Alignment:GTCGAGCTCGCCG
-GCGACCACACTG
 A T C G A C G T A G T C A C T G C G T A C T A G A G T C C G A T A G T C A C T G A T G C A G T C A C T G
A C G T C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.45
Offset:5
Orientation:forward strand
Alignment:GTCGAGCTCGCCG
-----GCTCCG--
 A T C G A C G T A G T C A C T G C G T A C T A G A G T C C G A T A G T C A C T G A T G C A G T C A C T G
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T