Information for 3-ACTAATWTMMAMT (Motif 3)

C G T A A G T C A C G T C G T A C T G A A C G T C G A T A C G T G T C A G T A C C G T A G T C A A G C T
Reverse Opposite:
C T G A A C G T A C G T A C T G A C G T C G T A C G T A C G T A A G C T A C G T C G T A A C T G A C G T
p-value:1e-12
log p-value:-2.981e+01
Information Content per bp:1.867
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.5 +/- 22.5bp
Average Position of motif in Background82.2 +/- 1.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0010.1_Homeobox_class/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:ACTAATWTMMAMT
AATAATT------
 C G T A A G T C A C G T C G T A C T G A A C G T C G A T A C G T G T C A G T A C C G T A G T C A A G C T
G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T

PH0175.1_Vax2/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----ACTAATWTMMAMT
GTGCACTAATTAAGAC-
 A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A C T G A A C G T C G A T A C G T G T C A G T A C C G T A G T C A A G C T
A C T G C G A T T A C G A T G C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C G T A T C G A A C T G T C G A T A G C A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---ACTAATWTMMAMT
NTAATTAATAT-----
 A C G T A C G T A C G T C G T A A G T C A C G T C G T A C T G A A C G T C G A T A C G T G T C A G T A C C G T A G T C A A G C T
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0136.1_IRC900814_2/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----ACTAATWTMMAMT
TTTTACGACTTTCCAT-
 A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A C T G A A C G T C G A T A C G T G T C A G T A C C G T A G T C A A G C T
C G A T A G C T G C A T A G C T T C G A G A T C C T A G C T G A G T A C C A G T A G C T G A C T G A T C T G A C T C G A G A C T A C G T

PH0039.1_Mnx1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----ACTAATWTMMAMT
NNNCACTAATTANTNN-
 A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A C T G A A C G T C G A T A C G T G T C A G T A C C G T A G T C A A G C T
A T G C C T A G A T G C G A T C T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A T A C G A C G T T G C A T G A C A C G T

LHX2/MA0700.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ACTAATWTMMAMT
ACTAATTAAC---
 C G T A A G T C A C G T C G T A C T G A A C G T C G A T A C G T G T C A G T A C C G T A G T C A A G C T
T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C A C G T A C G T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:7
Score:0.58
Offset:-6
Orientation:forward strand
Alignment:------ACTAATWTMMAMT
ACCGTGACTAATTNN----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A C T G A A C G T C G A T A C G T G T C A G T A C C G T A G T C A A G C T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A A C G T A C G T A C G T A C G T

SHOX/MA0630.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:ACTAATWTMMAMT
-TTAATTGG----
 C G T A A G T C A C G T C G T A C T G A A C G T C G A T A C G T G T C A G T A C C G T A G T C A A G C T
A C G T G A C T G C A T T C G A C T G A A C G T C G A T C T A G T C A G A C G T A C G T A C G T A C G T

VSX2/MA0726.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:ACTAATWTMMAMT
-CTAATTAG----
 C G T A A G T C A C G T C G T A C T G A A C G T C G A T A C G T G T C A G T A C C G T A G T C A A G C T
A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G A C G T A C G T A C G T A C G T

PH0091.1_Lhx1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---ACTAATWTMMAMT-
CGAATTAATTAATAATG
 A C G T A C G T A C G T C G T A A G T C A C G T C G T A C T G A A C G T C G A T A C G T G T C A G T A C C G T A G T C A A G C T A C G T
T G A C T C A G C G T A C G T A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G C A T G C T A G C T A G A C T A C T G