Information for 3-GCACACGTGC (Motif 4)

A C T G A G T C C T G A A G T C G T C A A G T C C A T G G C A T A C T G A G T C
Reverse Opposite:
C T A G A G T C C G T A G T A C T C A G A C G T A C T G A G C T A C T G A G T C
p-value:1e-9
log p-value:-2.281e+01
Information Content per bp:1.845
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif3.96%
Number of Background Sequences with motif223.2
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets50.5 +/- 28.6bp
Average Position of motif in Background47.2 +/- 29.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Npas2/MA0626.1/Jaspar

Match Rank:1
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:GCACACGTGC-
-NACACGTGCN
 A C T G A G T C C T G A A G T C G T C A A G T C C A T G G C A T A C T G A G T C A C G T
A C G T A C T G T G C A A G T C C G T A A G T C A C T G A C G T A C T G A T G C G A T C

Mlxip/MA0622.1/Jaspar

Match Rank:2
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:GCACACGTGC
--ACACGTGC
 A C T G A G T C C T G A A G T C G T C A A G T C C A T G G C A T A C T G A G T C
A C G T A C G T G T C A A G T C C G T A A G T C A C T G A C G T A C T G T A G C

HEY1/MA0823.1/Jaspar

Match Rank:3
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GCACACGTGC-
-GACACGTGCC
 A C T G A G T C C T G A A G T C G T C A A G T C C A T G G C A T A C T G A G T C A C G T
A C G T T A C G T C G A A G T C T C G A A G T C A T C G A G C T C T A G A G T C T G A C

Id2/MA0617.1/Jaspar

Match Rank:4
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:GCACACGTGC
--TCACGTGC
 A C T G A G T C C T G A A G T C G T C A A G T C C A T G G C A T A C T G A G T C
A C G T A C G T G A C T A G T C C G T A A G T C A C T G A C G T A C T G A G T C

MNT/MA0825.1/Jaspar

Match Rank:5
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GCACACGTGC-
-ACCACGTGCC
 A C T G A G T C C T G A A G T C G T C A A G T C C A T G G C A T A C T G A G T C A C G T
A C G T C T G A T A G C G T A C C G T A A G T C C T A G A C G T A C T G T G A C G A T C

MAX/MA0058.3/Jaspar

Match Rank:6
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GCACACGTGC-
-ACCACGTGCT
 A C T G A G T C C T G A A G T C G T C A A G T C C A T G G C A T A C T G A G T C A C G T
A C G T T G C A T G A C G T A C C T G A A G T C T C A G G A C T A C T G A T G C G A C T

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:7
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:GCACACGTGC-
---CACGTGBN
 A C T G A G T C C T G A A G T C G T C A A G T C C A T G G C A T A C T G A G T C A C G T
A C G T A C G T A C G T G T A C C T G A A G T C C T A G G C A T C A T G A C G T G C T A

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.73
Offset:2
Orientation:forward strand
Alignment:GCACACGTGC--
--KCACGTGMCN
 A C T G A G T C C T G A A G T C G T C A A G T C C A T G G C A T A C T G A G T C A C G T A C G T
A C G T A C G T C A T G G T A C C G T A A G T C C T A G A C G T A C T G G T A C A G T C A G C T

PB0044.1_Mtf1_1/Jaspar

Match Rank:9
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----GCACACGTGC-
NNTTTGCACACGGCCC
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C T G A A G T C G T C A A G T C C A T G G C A T A C T G A G T C A C G T
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:GCACACGTGC-
---CACGTGNC
 A C T G A G T C C T G A A G T C G T C A A G T C C A T G G C A T A C T G A G T C A C G T
A C G T A C G T A C G T G T A C C T G A A G T C C T A G G C A T A C T G G T C A G A T C