Information for 18-ACAACGGGAGAGA (Motif 28)

C G T A A G T C C G T A C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A G T C A C G T A G T C A G T C A G T C A C T G A C G T A C G T A C T G A C G T
p-value:1e-4
log p-value:-1.026e+01
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.0 +/- 25.4bp
Average Position of motif in Background79.6 +/- 5.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)2.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ACAACGGGAGAGA
AACAAAGG------
 A C G T C G T A A G T C C G T A C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--ACAACGGGAGAGA
GAACAATGGN-----
 A C G T A C G T C G T A A G T C C G T A C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-ACAACGGGAGAGA
RACAAWGG------
 A C G T C G T A A G T C C G T A C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:4
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----ACAACGGGAGAGA
NNTNNACAATGGGANNN-
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C C G T A C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ACAACGGGAGAGA
RNAACAATGG------
 A C G T A C G T A C G T C G T A A G T C C G T A C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---ACAACGGGAGAGA
VRRACAAWGG------
 A C G T A C G T A C G T C G T A A G T C C G T A C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ACAACGGGAGAGA
ACAAAG-------
 C G T A A G T C C G T A C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A
G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---ACAACGGGAGAGA
VRAACAATGG------
 A C G T A C G T A C G T C G T A A G T C C G T A C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0140.1_Irf6_2/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-ACAACGGGAGAGA-
NNNACCGAGAGTNNN
 A C G T C G T A A G T C C G T A C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---ACAACGGGAGAGA
AAAACAATGG------
 A C G T A C G T A C G T C G T A A G T C C G T A C G T A A G T C A C T G A C T G A C T G C G T A A C T G C G T A A C T G C G T A
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T