Information for 4-AGCAGACCGCGGAACC (Motif 12)

C G T A A C T G A G T C T C G A T A C G T C G A A T G C G T A C C A T G T A G C T C A G C T A G T C G A T C G A T G A C A G T C
Reverse Opposite:
T A C G A C T G A G C T A G C T A G T C A G T C A T C G G T A C C A T G A T C G A G C T A T G C A G C T C T A G T G A C G C A T
p-value:1e-9
log p-value:-2.132e+01
Information Content per bp:1.668
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif29.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets45.4 +/- 24.1bp
Average Position of motif in Background57.3 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL011.1_XCPE1/Jaspar

Match Rank:1
Score:0.56
Offset:6
Orientation:forward strand
Alignment:AGCAGACCGCGGAACC
------GGGCGGGACC
 C G T A A C T G A G T C T C G A T A C G T C G A A T G C G T A C C A T G T A G C T C A G C T A G T C G A T C G A T G A C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGCAGACCGCGGAACC
-CCAGACAG-------
 C G T A A C T G A G T C T C G A T A C G T C G A A T G C G T A C C A T G T A G C T C A G C T A G T C G A T C G A T G A C A G T C
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGCAGACCGCGGAACC
-CCAGACRSVB-----
 C G T A A C T G A G T C T C G A T A C G T C G A A T G C G T A C C A T G T A G C T C A G C T A G T C G A T C G A T G A C A G T C
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:AGCAGACCGCGGAACC
--CAGGCCNNGGCCNN
 C G T A A C T G A G T C T C G A T A C G T C G A A T G C G T A C C A T G T A G C T C A G C T A G T C G A T C G A T G A C A G T C
A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:AGCAGACCGCGGAACC
-TCAGNGAGCGTGAC-
 C G T A A C T G A G T C T C G A T A C G T C G A A T G C G T A C C A T G T A G C T C A G C T A G T C G A T C G A T G A C A G T C
A C G T A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:6
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGACCGCGGAACC
NNGCNCTGCGCGGC---
 A C G T C G T A A C T G A G T C T C G A T A C G T C G A A T G C G T A C C A T G T A G C T C A G C T A G T C G A T C G A T G A C A G T C
T C G A A G T C C A T G G A T C T G C A G A T C C A G T A C T G A G T C C T A G A T G C C T A G C T A G G T A C A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:7
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----AGCAGACCGCGGAACC
TGGCCACCAGGGGGCGCTA--
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C T C G A T A C G T C G A A T G C G T A C C A T G T A G C T C A G C T A G T C G A T C G A T G A C A G T C
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---AGCAGACCGCGGAACC-
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T C G T A A C T G A G T C T C G A T A C G T C G A A T G C G T A C C A T G T A G C T C A G C T A G T C G A T C G A T G A C A G T C A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----AGCAGACCGCGGAACC
CAAATCCAGACATCACA---
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C T C G A T A C G T C G A A T G C G T A C C A T G T A G C T C A G C T A G T C G A T C G A T G A C A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:10
Score:0.49
Offset:3
Orientation:forward strand
Alignment:AGCAGACCGCGGAACC
---RGKGGGCGGAGC-
 C G T A A C T G A G T C T C G A T A C G T C G A A T G C G T A C C A T G T A G C T C A G C T A G T C G A T C G A T G A C A G T C
A C G T A C G T A C G T C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T