Information for 6-GGGGACTGAGAGCCAG (Motif 6)

A T C G A C T G A C T G A C T G C T G A A G T C C G A T C T A G C G T A A C T G C T G A A C T G G T A C A T G C C G T A A C T G
Reverse Opposite:
A G T C A C G T A T C G A C T G A G T C A G C T A G T C A C G T A G T C C G T A A C T G A G C T G T A C A G T C A G T C A T G C
p-value:1e-11
log p-value:-2.755e+01
Information Content per bp:1.860
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.0 +/- 18.6bp
Average Position of motif in Background43.4 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GGGGACTGAGAGCCAG--
------TGAGTGACAGSC
 A T C G A C T G A C T G A C T G C T G A A G T C C G A T C T A G C G T A A C T G C T G A A C T G G T A C A T G C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GGGGACTGAGAGCCAG-
-----NTGATTGACAGN
 A T C G A C T G A C T G A C T G C T G A A G T C C G A T C T A G C G T A A C T G C T G A A C T G G T A C A T G C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GGGGACTGAGAGCCAG-
-----BTGABTGACAGS
 A T C G A C T G A C T G A C T G C T G A A G T C C G A T C T A G C G T A A C T G C T G A A C T G G T A C A T G C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

MZF1/MA0056.1/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGGGACTGAGAGCCAG
TGGGGA-----------
 A C G T A T C G A C T G A C T G A C T G C T G A A G T C C G A T C T A G C G T A A C T G C T G A A C T G G T A C A T G C C G T A A C T G
A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GGGGACTGAGAGCCAG
--TGGCAGNCTGCCAG
 A T C G A C T G A C T G A C T G C T G A A G T C C G A T C T A G C G T A A C T G C T G A A C T G G T A C A T G C C G T A A C T G
A C G T A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:6
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----GGGGACTGAGAGCCAG
NNGAGGTTACTNNAGGTCA-
 A C G T A C G T A C G T A C G T A T C G A C T G A C T G A C T G C T G A A G T C C G A T C T A G C G T A A C T G C T G A A C T G G T A C A T G C C G T A A C T G
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GGGGACTGAGAGCCAG
AGGGGTCAGAGGTCA--
 A C G T A T C G A C T G A C T G A C T G C T G A A G T C C G A T C T A G C G T A A C T G C T G A A C T G G T A C A T G C C G T A A C T G
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T A C G T

PLAG1/MA0163.1/Jaspar

Match Rank:8
Score:0.49
Offset:0
Orientation:forward strand
Alignment:GGGGACTGAGAGCCAG
GGGGCCCAAGGGGG--
 A T C G A C T G A C T G A C T G C T G A A G T C C G A T C T A G C G T A A C T G C T G A A C T G G T A C A T G C C G T A A C T G
A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:9
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-GGGGACTGAGAGCCAG
GTAGGTCACTGGGTCA-
 A C G T A T C G A C T G A C T G A C T G C T G A A G T C C G A T C T A G C G T A A C T G C T G A A C T G G T A C A T G C C G T A A C T G
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:GGGGACTGAGAGCCAG
-GGAACAAAGR-----
 A T C G A C T G A C T G A C T G C T G A A G T C C G A T C T A G C G T A A C T G C T G A A C T G G T A C A T G C C G T A A C T G
A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T